Variant report

Variant	rs138028218
Chromosome Location	chr6:81233404-81233405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv463908	chr6:81232993-81287675	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv604054	chr6:81232993-81287675	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81230200-81234000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81230400-81237800	Weak transcription	Pancreas	Pancrea
3	chr6:81230800-81234000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:81231400-81233600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:81231800-81233600	Enhancers	Fetal Stomach	stomach
6	chr6:81231800-81233600	Enhancers	HSMM	muscle
7	chr6:81231800-81233800	Enhancers	NHDF-Ad	bronchial
8	chr6:81231800-81234000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:81231800-81234000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:81231800-81234200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:81231800-81234200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:81232000-81233800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:81232000-81234000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:81232000-81234200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:81232200-81233800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:81232400-81233600	Enhancers	Colon Smooth Muscle	Colon
17	chr6:81232400-81233600	Enhancers	Osteobl	bone
18	chr6:81232400-81233800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:81232400-81234000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:81232400-81234000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:81232400-81234000	Enhancers	Fetal Heart	heart
22	chr6:81232400-81234000	Enhancers	HSMMtube	muscle
23	chr6:81232400-81234000	Enhancers	NHLF	lung
24	chr6:81232400-81234200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr6:81232400-81235800	Enhancers	Fetal Brain Male	brain
26	chr6:81232600-81233600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:81232600-81233600	Enhancers	Fetal Muscle Leg	muscle
28	chr6:81232600-81233800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:81232600-81233800	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr6:81232800-81233600	Active TSS	Brain Anterior Caudate	brain
31	chr6:81232800-81233600	Active TSS	Fetal Kidney	kidney
32	chr6:81232800-81234000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:81232800-81234000	Enhancers	Right Ventricle	heart
34	chr6:81232800-81234200	Enhancers	H1 Cell Line	embryonic stem cell
35	chr6:81232800-81234200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:81232800-81237000	Weak transcription	Fetal Lung	lung
37	chr6:81233000-81233600	Flanking Active TSS	Left Ventricle	heart
38	chr6:81233000-81233600	Flanking Active TSS	Ovary	ovary
39	chr6:81233000-81233600	Enhancers	HMEC	breast
40	chr6:81233000-81233800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr6:81233000-81234000	Enhancers	Small Intestine	intestine
42	chr6:81233000-81234000	Flanking Active TSS	HUVEC	blood vessel
43	chr6:81233000-81234200	Enhancers	H9 Cell Line	embryonic stem cell
44	chr6:81233000-81234200	Enhancers	Psoas Muscle	Psoas
45	chr6:81233000-81234200	Enhancers	HepG2	liver
46	chr6:81233200-81233600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:81233200-81233600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:81233200-81233600	Enhancers	Colonic Mucosa	Colon
49	chr6:81233200-81233600	Enhancers	Esophagus	oesophagus
50	chr6:81233200-81233600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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