Variant report

Variant	rs138046036
Chromosome Location	chr1:220702208-220702209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350899	chr1:220700629-220702677	Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220700200-220703600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr1:220700200-220704600	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr1:220700400-220702800	Active TSS	NHEK	skin
4	chr1:220700400-220703400	Active TSS	Brain Cingulate Gyrus	brain
5	chr1:220700400-220703400	Active TSS	Brain Substantia Nigra	brain
6	chr1:220700400-220703400	Active TSS	Fetal Kidney	kidney
7	chr1:220700400-220703600	Active TSS	H9 Cell Line	embryonic stem cell
8	chr1:220700400-220703600	Active TSS	Brain Angular Gyrus	brain
9	chr1:220700400-220703600	Active TSS	Brain Anterior Caudate	brain
10	chr1:220700400-220703800	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr1:220700400-220704000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr1:220700600-220702800	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr1:220700600-220702800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr1:220700600-220702800	Bivalent/Poised TSS	HSMM	muscle
15	chr1:220700600-220702800	Bivalent/Poised TSS	HSMMtube	muscle
16	chr1:220700600-220703000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:220700600-220703000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:220700600-220703000	Active TSS	Muscle Satellite Cultured Cells	--
19	chr1:220700600-220703000	Active TSS	Psoas Muscle	Psoas
20	chr1:220700600-220703400	Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr1:220700600-220703400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr1:220700600-220703400	Active TSS	Aorta	Aorta
23	chr1:220700600-220703600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr1:220700600-220703600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:220700600-220703600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:220700800-220702600	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr1:220700800-220702600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr1:220700800-220702600	Active TSS	Fetal Lung	lung
29	chr1:220700800-220702600	Bivalent/Poised TSS	Thymus	Thymus
30	chr1:220700800-220702800	Active TSS	Colon Smooth Muscle	Colon
31	chr1:220700800-220703000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr1:220700800-220703000	Active TSS	Esophagus	oesophagus
33	chr1:220700800-220703200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:220700800-220703200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr1:220700800-220703200	Active TSS	NHDF-Ad	bronchial
36	chr1:220700800-220703400	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr1:220700800-220703400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:220700800-220703400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:220700800-220703400	Active TSS	Left Ventricle	heart
40	chr1:220700800-220703600	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr1:220700800-220703800	Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr1:220700800-220704400	Active TSS	Fetal Brain Male	brain
43	chr1:220701000-220702400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr1:220701000-220702400	Flanking Active TSS	Liver	Liver
45	chr1:220701000-220702400	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr1:220701000-220702400	Bivalent/Poised TSS	Fetal Stomach	stomach
47	chr1:220701000-220702400	Active TSS	Small Intestine	intestine
48	chr1:220701000-220702400	Bivalent/Poised TSS	A549	lung
49	chr1:220701000-220702600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:220701000-220702800	Bivalent/Poised TSS	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links