Variant report

Variant	rs138055502
Chromosome Location	chr5:127152641-127152642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv4992	chr5:127151699-127196349	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv980945	chr5:127151707-127155584	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127149000-127154400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:127150000-127159400	Weak transcription	Right Atrium	heart
3	chr5:127150400-127154400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:127151000-127154200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:127151000-127156600	Weak transcription	NHDF-Ad	bronchial
6	chr5:127151000-127159000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:127151000-127161200	Weak transcription	HSMM	muscle
8	chr5:127151200-127156600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:127151200-127156800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:127152400-127156800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:127152600-127154200	Weak transcription	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links