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Variant report
Variant
rs138063511
Chromosome Location
chr1:102346167-102346168
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:6)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
TCF12
chr1:102346162-102346323
GM12878
blood:
n/a
n/a
2
EBF1
chr1:102346135-102346323
GM12878
blood:
n/a
n/a
3
BATF
chr1:102346026-102346355
GM12878
blood:
n/a
n/a
4
IRF4
chr1:102346009-102346359
GM12878
blood:
n/a
n/a
5
BATF
chr1:102346057-102346369
GM12878
blood:
n/a
n/a
6
BCL11A
chr1:102346126-102346353
GM12878
blood:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
ENSG00000271277
TF binding region
Extended variants information (count: 3 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv522921
chr1:102170295-102876392
Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers
TF binding regionCpG islandChromatin interactive regionlncRNA
17 gene(s)
inside rSNPs
diseases
2
nsv522156
chr1:102309649-102421714
Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer
TF binding regionCpG islandChromatin interactive regionlncRNA
4 gene(s)
inside rSNPs
diseases
3
nsv946102
chr1:102345540-102348085
Inactive region
TF binding regionlncRNA
1 gene(s)
inside rSNPs
n/a
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links