Variant report

Variant	rs138068360
Chromosome Location	chr12:120888114-120888115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:120887982-120888144	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:120728333..120729932-chr12:120886056..120888165,2	K562	blood:
2	chr12:120886085..120888249-chr12:120933433..120935397,2	K562	blood:
3	chr12:120728080..120732034-chr12:120882797..120888425,5	K562	blood:
4	chr12:120729043..120731764-chr12:120885263..120888215,2	MCF-7	breast:

Variant related genes	Relation type
TRIAP1	TF binding region
ENSG00000200795	Chromatin interaction
ENSG00000248008	Chromatin interaction
ENSG00000088986	Chromatin interaction
ENSG00000202538	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv983369	chr12:120887964-120888585	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120884800-120893000	Weak transcription	Aorta	Aorta
2	chr12:120884800-120893200	Weak transcription	Small Intestine	intestine
3	chr12:120885000-120893800	Weak transcription	Ovary	ovary
4	chr12:120885400-120892200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:120885400-120892200	Weak transcription	Left Ventricle	heart
6	chr12:120885400-120892600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:120885400-120893200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:120885400-120893200	Weak transcription	Colonic Mucosa	Colon
9	chr12:120885400-120893800	Weak transcription	Esophagus	oesophagus
10	chr12:120885400-120893800	Weak transcription	Lung	lung
11	chr12:120885400-120894000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:120885400-120895600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr12:120885400-120904400	Strong transcription	Fetal Muscle Trunk	muscle
14	chr12:120885400-120906000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr12:120885400-120906000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr12:120885600-120890000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr12:120885600-120890000	Weak transcription	HMEC	breast
18	chr12:120885600-120890400	Weak transcription	Fetal Lung	lung
19	chr12:120885600-120892600	Weak transcription	Adipose Nuclei	Adipose
20	chr12:120885600-120893800	Weak transcription	HSMMtube	muscle
21	chr12:120885600-120894000	Weak transcription	Brain Anterior Caudate	brain
22	chr12:120885600-120894400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:120885600-120896400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr12:120885600-120904000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:120885600-120904000	Strong transcription	Fetal Stomach	stomach
26	chr12:120885800-120888200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr12:120885800-120888200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr12:120885800-120888400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr12:120885800-120888800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr12:120885800-120888800	Strong transcription	Fetal Intestine Large	intestine
31	chr12:120885800-120889000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr12:120885800-120889400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr12:120885800-120890000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr12:120885800-120890200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr12:120885800-120890600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr12:120885800-120890600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr12:120885800-120890600	Weak transcription	Stomach Mucosa	stomach
38	chr12:120885800-120890800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr12:120885800-120890800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr12:120885800-120890800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr12:120885800-120890800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr12:120885800-120890800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr12:120885800-120891200	Weak transcription	NHDF-Ad	bronchial
44	chr12:120885800-120893200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr12:120885800-120893800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr12:120885800-120894000	Weak transcription	Brain Angular Gyrus	brain
47	chr12:120885800-120894000	Weak transcription	Psoas Muscle	Psoas
48	chr12:120885800-120894000	Weak transcription	HUVEC	blood vessel
49	chr12:120885800-120894200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr12:120885800-120894200	Weak transcription	Brain Substantia Nigra	brain

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