Variant report

Variant	rs13807
Chromosome Location	chr11:64889034-64889035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:115)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:115 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64888956-64890102	GM19193	blood:	n/a	n/a
2	POLR2A	chr11:64888689-64890125	GM12891	blood:	n/a	n/a
3	POLR2A	chr11:64888279-64890118	HepG2	liver:	n/a	n/a
4	HEY1	chr11:64888709-64890073	K562	blood:	n/a	n/a
5	MXI1	chr11:64888126-64890285	IMR90	lung:	n/a	n/a
6	HCFC1	chr11:64888508-64890292	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr11:64888717-64890028	K562	blood:	n/a	n/a
8	MAX	chr11:64889009-64890010	Hela-S3	cervix:	n/a	chr11:64889407-64889418
9	MYC	chr11:64888781-64890174	K562	blood:	n/a	chr11:64889407-64889418
10	POLR2A	chr11:64888094-64890053	GM12892	blood:	n/a	n/a
11	MAX	chr11:64888838-64890114	H1-hESC	embryonic stem cell:	n/a	chr11:64889407-64889418
12	POLR2A	chr11:64889017-64890176	HUVEC	blood vessel:	n/a	n/a
13	CHD1	chr11:64888729-64890177	GM12878	blood:	n/a	n/a
14	POLR2A	chr11:64881694-64890247	PFSK-1	brain:	n/a	n/a
15	POLR2A	chr11:64888293-64890309	PANC-1	pancreas:	n/a	n/a
16	CHD1	chr11:64888598-64890288	IMR90	lung:	n/a	n/a
17	NR2F2	chr11:64888618-64890122	K562	blood:	n/a	n/a
18	POLR2A	chr11:64888678-64890110	GM12878	blood:	n/a	n/a
19	MAZ	chr11:64889007-64889079	K562	blood:	n/a	n/a
20	MYC	chr11:64888776-64890070	NB4	blood:	n/a	chr11:64889407-64889418
21	YY1	chr11:64888843-64890133	K562	blood:	n/a	chr11:64889581-64889598
22	POLR2A	chr11:64888785-64890249	Hela-S3	cervix:	n/a	n/a
23	MTA3	chr11:64888939-64890225	GM12878	blood:	n/a	n/a
24	CTCF	chr11:64889014-64889092	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr11:64888742-64890184	PBDE	blood:	n/a	n/a
26	CTCF	chr11:64888850-64889366	T-47D	breast:	n/a	n/a
27	CTCF	chr11:64888920-64889070	RPTEC	kidney:	n/a	n/a
28	POLR2A	chr11:64889017-64890173	MCF-7	breast:	n/a	n/a
29	MYC	chr11:64888799-64890082	K562	blood:	n/a	chr11:64889407-64889418
30	POLR2A	chr11:64888766-64890099	K562	blood:	n/a	n/a
31	POLR2A	chr11:64888760-64890136	K562	blood:	n/a	n/a
32	POLR2A	chr11:64887131-64890303	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr11:64888609-64890241	K562	blood:	n/a	n/a
34	YY1	chr11:64888896-64890182	K562	blood:	n/a	chr11:64889581-64889598
35	YY1	chr11:64888976-64890186	GM12892	blood:	n/a	chr11:64889581-64889598
36	POLR2A	chr11:64885726-64890254	GM12878	blood:	n/a	n/a
37	CREB1	chr11:64888883-64890164	H1-hESC	embryonic stem cell:	n/a	chr11:64889645-64889658
38	TBP	chr11:64888930-64889084	HepG2	liver:	n/a	n/a
39	YY1	chr11:64888906-64890274	GM12878	blood:	n/a	chr11:64889581-64889598
40	CREB1	chr11:64888850-64890263	HepG2	liver:	n/a	chr11:64889645-64889658
41	ELF1	chr11:64888898-64889977	GM12878	blood:	n/a	chr11:64889600-64889611
42	SIN3A	chr11:64888738-64890182	H1-hESC	embryonic stem cell:	n/a	chr11:64889407-64889416
43	ELF1	chr11:64888870-64889101	K562	blood:	n/a	n/a
44	CTCF	chr11:64888920-64889070	HepG2	liver:	n/a	n/a
45	CTCF	chr11:64888960-64889110	HEK293	kidney:	n/a	n/a
46	POLR2A	chr11:64888727-64890164	Hela-S3	cervix:	n/a	n/a
47	MAX	chr11:64888868-64889976	K562	blood:	n/a	chr11:64889407-64889418
48	POLR2A	chr11:64888765-64889236	ECC-1	luminal epithelium:	n/a	n/a
49	MXI1	chr11:64888812-64889067	HepG2	liver:	n/a	n/a
50	POLR2A	chr11:64888737-64890246	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64887177..64889563-chr11:64975321..64976932,2	K562	blood:
2	chr11:64544794..64547284-chr11:64888785..64891243,2	MCF-7	breast:
3	chr11:64889010..64891240-chr11:64947236..64950448,4	K562	blood:
4	chr11:64888409..64891347-chr11:64936765..64941464,6	MCF-7	breast:
5	chr11:64887671..64894047-chr11:64935608..64941283,15	K562	blood:
6	chr11:64889009..64889638-chr3:57583266..57584131,2	Hela-S3	cervix:
7	chr11:64887509..64889664-chr11:65266185..65268284,2	MCF-7	breast:
8	chr11:64888081..64892747-chr11:64946823..64951612,8	MCF-7	breast:
9	chr11:64877702..64891058-chr11:64944203..64957091,32	K562	blood:
10	chr11:64887534..64891326-chr11:65027495..65030120,4	MCF-7	breast:
11	chr11:64862442..64864191-chr11:64887487..64890619,3	K562	blood:
12	chr11:64888951..64891503-chr11:64955622..64957144,2	MCF-7	breast:
13	chr11:64887057..64892358-chr11:65027493..65031887,5	K562	blood:
14	chr11:64779895..64782091-chr11:64887695..64889902,3	K562	blood:
15	chr11:64619768..64622619-chr11:64888146..64890410,3	MCF-7	breast:
16	chr11:64888312..64893387-chr11:64951706..64955535,4	K562	blood:
17	chr11:64778507..64787901-chr11:64877920..64890097,31	K562	blood:
18	chr11:64851613..64854142-chr11:64888312..64890882,3	K562	blood:
19	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
20	chr11:64793339..64795778-chr11:64887755..64890095,2	K562	blood:
21	chr11:64883613..64891269-chr11:65027573..65033885,11	K562	blood:
22	chr11:64888451..64891449-chr11:64936430..64939217,7	K562	blood:
23	chr11:64888348..64889154-chr17:41444777..41445641,2	Hela-S3	cervix:
24	chr11:64844285..64846947-chr11:64888337..64891082,3	K562	blood:
25	chr11:64781559..64786098-chr11:64888152..64890441,5	MCF-7	breast:

No data

Variant related genes	Relation type
ZNHIT2	TF binding region
MRPL49	TF binding region
ENSG00000146670	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000255200	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000249251	Chromatin interaction
ENSG00000272146	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000168374	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000251562	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17883283	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64887800-64889200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:64888000-64889400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
3	chr11:64888200-64889200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:64888200-64889200	Transcr. at gene 5' and 3'	A549	lung
5	chr11:64888200-64889200	Transcr. at gene 5' and 3'	NHEK	skin
6	chr11:64888200-64889400	Transcr. at gene 5' and 3'	Dnd41	blood
7	chr11:64888200-64890000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
8	chr11:64888400-64889200	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr11:64888400-64889200	Flanking Active TSS	Fetal Brain Female	brain
10	chr11:64888400-64889200	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
11	chr11:64888400-64889200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
12	chr11:64888400-64890000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:64888400-64890600	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:64888600-64889200	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr11:64888600-64889200	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr11:64888600-64889200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:64888600-64889200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:64888600-64889200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr11:64888600-64889200	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr11:64888600-64889200	Flanking Active TSS	Colonic Mucosa	Colon
21	chr11:64888600-64889200	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr11:64888600-64889200	Flanking Active TSS	Fetal Brain Male	brain
23	chr11:64888600-64889200	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
24	chr11:64888600-64889200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
25	chr11:64888600-64889200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
26	chr11:64888600-64889200	Flanking Active TSS	Right Ventricle	heart
27	chr11:64888600-64889200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr11:64888600-64889400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:64888600-64889400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr11:64888600-64889400	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
31	chr11:64888600-64890600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:64888600-64890600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:64888800-64889200	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:64888800-64889200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr11:64888800-64889200	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:64888800-64889200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
37	chr11:64888800-64889200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr11:64888800-64889200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:64888800-64889200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
40	chr11:64888800-64889200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr11:64888800-64889200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:64888800-64889200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:64888800-64889200	Flanking Active TSS	Liver	Liver
44	chr11:64888800-64889200	Flanking Active TSS	Brain Angular Gyrus	brain
45	chr11:64888800-64889200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr11:64888800-64889200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:64888800-64889200	Flanking Active TSS	Fetal Muscle Trunk	muscle
48	chr11:64888800-64889200	Flanking Active TSS	Gastric	stomach
49	chr11:64888800-64889200	Flanking Active TSS	Spleen	Spleen
50	chr11:64888800-64889200	Flanking Active TSS	HSMMtube	muscle

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