Variant report

Variant	rs138108778
Chromosome Location	chr1:227026755-227026756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4766	chr1:227025954-227070961	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227025400-227026800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr1:227025600-227027200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:227025800-227026800	Enhancers	HMEC	breast
4	chr1:227025800-227027400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:227026000-227026800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:227026000-227027000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:227026200-227026800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:227026400-227026800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:227026400-227027000	Enhancers	Hela-S3	cervix
10	chr1:227026600-227028000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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