Variant report

Variant	rs1382009
Chromosome Location	chr20:52909011-52909012
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2616329	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2616331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2616334	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52906600-52909600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr20:52907400-52909200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr20:52907400-52909400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr20:52907400-52909600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr20:52907600-52909600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr20:52907600-52909800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr20:52907600-52910000	Enhancers	Stomach Mucosa	stomach
8	chr20:52907800-52909800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr20:52908000-52909200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr20:52908000-52909400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:52908200-52909800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr20:52908200-52910200	Enhancers	Colon Smooth Muscle	Colon
13	chr20:52908400-52909600	Enhancers	NH-A	brain
14	chr20:52908800-52910000	Enhancers	Hela-S3	cervix
15	chr20:52909000-52909600	Enhancers	HUVEC	blood vessel
16	chr20:52909000-52910200	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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