Variant report

Variant	rs138222480
Chromosome Location	chr6:144520431-144520432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv965777	chr6:144520169-144522526	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144516200-144522000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:144517400-144523400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:144518800-144520600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:144519400-144520800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:144519800-144520600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:144520000-144520600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr6:144520000-144520600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:144520000-144520800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:144520200-144520800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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