Variant report

Variant	rs138239218
Chromosome Location	chr5:115071673-115071674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1024641	chr5:115030110-115123474	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1021139	chr5:115036724-115131280	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv823184	chr5:115071293-115071735	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115060600-115081000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:115068800-115072200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:115069200-115072200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:115069200-115074400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:115070200-115073400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:115070600-115074600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr5:115070800-115071800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:115070800-115071800	Enhancers	Aorta	Aorta
9	chr5:115070800-115073400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:115071000-115071800	Enhancers	Primary B cells from cord blood	blood
11	chr5:115071000-115073800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:115071000-115073800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr5:115071000-115074200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:115071000-115074600	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr5:115071400-115073600	Weak transcription	HepG2	liver
16	chr5:115071600-115072000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr5:115071600-115072200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr5:115071600-115072400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:115071600-115072800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:115071600-115073000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr5:115071600-115073000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr5:115071600-115073400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:115071600-115073800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr5:115071600-115074400	Enhancers	Liver	Liver

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