Variant report

Variant	rs1382568
Chromosome Location	chr8:11351220-11351221
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr8:11349083-11353262	GM12878	blood:	n/a	chr8:11349703-11349714 chr8:11349930-11349942 chr8:11351042-11351049 chr8:11352671-11352682
2	SPI1	chr8:11350464-11351243	GM12891	blood:	n/a	chr8:11351043-11351052 chr8:11351041-11351054 chr8:11351042-11351055 chr8:11351044-11351051 chr8:11350562-11350571
3	RCOR1	chr8:11349075-11352611	GM12878	blood:	n/a	n/a
4	FOXM1	chr8:11348939-11352758	GM12878	blood:	n/a	n/a
5	NFATC1	chr8:11349083-11352677	GM12878	blood:	n/a	n/a
6	MAX	chr8:11349289-11352553	GM12878	blood:	n/a	chr8:11350650-11350660 chr8:11350650-11350659 chr8:11351841-11351851
7	POLR2A	chr8:11349424-11352600	GM12878	blood:	n/a	n/a
8	YY1	chr8:11350786-11351331	GM12878	blood:	n/a	n/a
9	BHLHE40	chr8:11349162-11351476	GM12878	blood:	n/a	n/a
10	BCLAF1	chr8:11348871-11353485	GM12878	blood:	n/a	chr8:11350566-11350575 chr8:11349705-11349714 chr8:11349172-11349179
11	RELA	chr8:11349255-11351265	GM12891	blood:	n/a	n/a
12	NFATC1	chr8:11349138-11353285	GM12878	blood:	n/a	n/a
13	NFIC	chr8:11348816-11353401	GM12878	blood:	n/a	chr8:11352085-11352101
14	POLR2A	chr8:11349389-11352610	GM12878	blood:	n/a	n/a
15	POU2F2	chr8:11350796-11351257	GM12891	blood:	n/a	n/a
16	RELA	chr8:11349256-11351231	GM18951	blood:	n/a	n/a
17	CHD2	chr8:11349285-11351579	GM12878	blood:	n/a	n/a
18	POLR2A	chr8:11350704-11352631	GM19099	blood:	n/a	n/a
19	IRF3	chr8:11350882-11351276	GM12878	blood:	n/a	n/a
20	TAF1	chr8:11350782-11351313	GM12878	blood:	n/a	n/a
21	RELA	chr8:11349085-11352720	GM12878	blood:	n/a	n/a
22	CUX1	chr8:11350534-11351253	GM12878	blood:	n/a	n/a
23	SPI1	chr8:11350452-11351236	GM12891	blood:	n/a	chr8:11351043-11351052 chr8:11351041-11351054 chr8:11351042-11351055 chr8:11351044-11351051 chr8:11350562-11350571
24	POLR2A	chr8:11348731-11357871	GM12878	blood:	n/a	n/a
25	JUND	chr8:11350968-11351283	HepG2	liver:	n/a	chr8:11351131-11351140 chr8:11351158-11351167 chr8:11351213-11351221
26	SIN3A	chr8:11350777-11352549	GM12878	blood:	n/a	n/a
27	FOXM1	chr8:11349085-11352717	GM12878	blood:	n/a	n/a
28	ZNF143	chr8:11350943-11352413	GM12878	blood:	n/a	chr8:11351794-11351812
29	SPI1	chr8:11349183-11351453	GM12878	blood:	n/a	chr8:11351043-11351052 chr8:11351041-11351054 chr8:11351042-11351055 chr8:11351044-11351051 chr8:11350562-11350571
30	POLR2A	chr8:11349332-11352688	GM12892	blood:	n/a	n/a
31	YY1	chr8:11350832-11351451	GM12878	blood:	n/a	n/a
32	MTA3	chr8:11349139-11352733	GM12878	blood:	n/a	n/a
33	BCLAF1	chr8:11349213-11352688	GM12878	blood:	n/a	chr8:11350566-11350575 chr8:11349705-11349714
34	TCF3	chr8:11349320-11351311	GM12878	blood:	n/a	chr8:11350864-11350879
35	PAX5	chr8:11350738-11351244	GM12878	blood:	n/a	chr8:11351042-11351051
36	MXI1	chr8:11349147-11352672	GM12878	blood:	n/a	n/a
37	EBF1	chr8:11350795-11351996	GM12878	blood:	n/a	n/a
38	RELA	chr8:11348954-11351628	GM10847	blood:	n/a	n/a
39	POLR2A	chr8:11349422-11352626	GM19193	blood:	n/a	n/a
40	POLR2A	chr8:11348894-11357440	GM12878	blood:	n/a	n/a
41	POLR2A	chr8:11348840-11353431	Raji	blood:	n/a	n/a
42	BRCA1	chr8:11350951-11351238	GM12878	blood:	n/a	n/a
43	POLR2A	chr8:11348797-11357460	GM12878	blood:	n/a	n/a
44	NRF1	chr8:11350454-11351491	GM12878	blood:	n/a	chr8:11350608-11350622
45	JUN	chr8:11351038-11351274	HepG2	liver:	n/a	chr8:11351131-11351140 chr8:11351158-11351167 chr8:11351213-11351221 chr8:11351130-11351143
46	POLR2A	chr8:11348826-11357664	GM18505	blood:	n/a	n/a
47	IKZF1	chr8:11349242-11351367	GM12878	blood:	n/a	n/a
48	USF2	chr8:11350935-11351768	GM12878	blood:	n/a	n/a
49	CHD1	chr8:11349035-11353547	GM12878	blood:	n/a	n/a
50	PML	chr8:11348838-11353257	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
BLK	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13277113	0.93[ASN][1000 genomes]
rs1478887	0.90[ASN][1000 genomes]
rs1478895	0.87[ASN][1000 genomes]
rs1478900	0.81[ASN][1000 genomes]
rs1478901	0.91[ASN][1000 genomes]
rs2061831	0.94[ASN][1000 genomes]
rs2250788	0.87[ASN][1000 genomes]
rs2251056	0.86[ASN][1000 genomes]
rs2254546	0.86[ASN][1000 genomes]
rs2254660	0.83[ASN][1000 genomes]
rs2409780	0.92[ASN][1000 genomes]
rs2618444	0.92[ASN][1000 genomes]
rs2618473	0.96[ASN][1000 genomes]
rs2618476	0.97[ASN][1000 genomes]
rs2618480	0.87[ASN][1000 genomes]
rs2618481	0.98[ASN][1000 genomes]
rs2736332	0.95[ASN][1000 genomes]
rs2736336	0.88[ASN][1000 genomes]
rs2736337	0.89[ASN][1000 genomes]
rs2736338	0.88[ASN][1000 genomes]
rs2736340	0.96[ASN][1000 genomes]
rs2736343	0.85[ASN][1000 genomes]
rs2736344	0.87[ASN][1000 genomes]
rs2736345	0.87[ASN][1000 genomes]
rs4840565	0.84[ASN][1000 genomes]
rs4840568	0.95[ASN][1000 genomes]
rs7812879	0.80[ASN][1000 genomes]
rs922483	0.83[ASN][1000 genomes]
rs9693589	0.93[ASN][1000 genomes]
rs9694294	0.87[ASN][1000 genomes]
rs998682	0.87[ASN][1000 genomes]
rs998683	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1382568	BLK	cis	multi-tissue	Pritchard
rs1382568	C8orf13	cis	multi-tissue	Pritchard

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11339000-11353800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:11344200-11353800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:11349000-11351600	Enhancers	Fetal Thymus	thymus
4	chr8:11349000-11351800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:11349000-11351800	Enhancers	Thymus	Thymus
6	chr8:11349600-11354400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:11349800-11351800	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr8:11349800-11351800	Flanking Active TSS	Primary B cells from peripheral blood	blood
9	chr8:11349800-11351800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr8:11349800-11352000	Flanking Active TSS	GM12878-XiMat	blood
11	chr8:11349800-11354000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:11350000-11352200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:11350000-11352600	Weak transcription	Osteobl	bone
14	chr8:11350200-11351800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:11350200-11356600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:11350400-11351600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:11350400-11351800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:11350400-11351800	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr8:11350400-11352800	Weak transcription	NH-A	brain
20	chr8:11350400-11354200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:11350400-11354400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:11350400-11355400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:11350600-11351400	Weak transcription	Primary T cells from cord blood	blood
24	chr8:11350600-11352000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:11350600-11354200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr8:11350800-11351600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:11350800-11351800	Flanking Active TSS	Dnd41	blood
28	chr8:11350800-11352200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:11350800-11353800	Weak transcription	NHDF-Ad	bronchial
30	chr8:11351000-11352800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr8:11351000-11353200	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr8:11351000-11354800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:11351200-11351600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
34	chr8:11351200-11351800	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr8:11351200-11352800	Active TSS	Primary T cells fromperipheralblood	blood

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