Variant report

Variant	rs138275748
Chromosome Location	chr3:142681354-142681355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000241570	TF binding region
U2SURP	TF binding region
PAQR9	TF binding region
ENSG00000175054	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv3443662	chr3:142681287-142684135	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142676200-142681600	Weak transcription	Psoas Muscle	Psoas
2	chr3:142679000-142681400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:142679400-142681400	Weak transcription	Right Atrium	heart
4	chr3:142679400-142682000	Flanking Active TSS	Liver	Liver
5	chr3:142679800-142681800	Weak transcription	K562	blood
6	chr3:142680600-142682000	Flanking Active TSS	HepG2	liver
7	chr3:142681000-142681400	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:142681000-142681400	Bivalent Enhancer	Left Ventricle	heart
9	chr3:142681000-142681600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr3:142681000-142682000	ZNF genes & repeats	Pancreas	Pancrea
11	chr3:142681000-142683600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
12	chr3:142681200-142681400	Bivalent/Poised TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:142681200-142681400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:142681200-142681400	Flanking Active TSS	A549	lung
15	chr3:142681200-142681600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:142681200-142682000	Flanking Active TSS	Right Ventricle	heart
17	chr3:142681200-142682200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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