Variant report

Variant	rs138279493
Chromosome Location	chr18:9674620-9674621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9670935..9675283-chr18:9677129..9681931,4	K562	blood:
2	chr18:9613080..9618986-chr18:9672487..9675941,11	MCF-7	breast:
3	chr18:9671290..9675239-chr18:9678368..9680804,3	MCF-7	breast:
4	chr18:9610770..9614979-chr18:9672273..9674769,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263627	Chromatin interaction
ENSG00000154845	Chromatin interaction
ENSG00000264644	Chromatin interaction
ENSG00000212572	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv576449	chr18:9623052-9700382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv978600	chr18:9674589-9684440	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9659800-9685400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:9671200-9675000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:9671200-9675200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr18:9672800-9674800	Enhancers	Stomach Mucosa	stomach
5	chr18:9673400-9674800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr18:9673800-9674800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:9673800-9674800	Enhancers	HMEC	breast
8	chr18:9673800-9675000	Weak transcription	Aorta	Aorta
9	chr18:9673800-9675000	Weak transcription	Fetal Muscle Leg	muscle
10	chr18:9673800-9675200	Enhancers	HepG2	liver
11	chr18:9673800-9675400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr18:9673800-9681200	Weak transcription	K562	blood
13	chr18:9673800-9685000	Weak transcription	Spleen	Spleen
14	chr18:9674000-9674800	Enhancers	NHEK	skin
15	chr18:9674000-9675000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr18:9674200-9675000	Weak transcription	Placenta	Placenta
17	chr18:9674200-9676000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr18:9674200-9679400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:9674400-9675000	Weak transcription	Pancreas	Pancrea
20	chr18:9674400-9675000	Enhancers	A549	lung
21	chr18:9674600-9675200	Enhancers	HSMMtube	muscle

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