Variant report

Variant	rs138291364
Chromosome Location	chr6:109803341-109803342
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109775795..109777582-chr6:109802976..109804493,2	MCF-7	breast:
2	chr6:109702597..109705942-chr6:109803330..109806291,3	K562	blood:
3	chr6:109759652..109764361-chr6:109800705..109806354,8	K562	blood:
4	chr6:109703226..109705290-chr6:109802868..109805423,2	K562	blood:
5	chr6:109787055..109789260-chr6:109802525..109804653,2	K562	blood:
6	chr6:109774016..109776250-chr6:109801827..109803875,2	K562	blood:
7	chr6:109802318..109804692-chr6:109827428..109829307,3	MCF-7	breast:
8	chr6:109774750..109777186-chr6:109800628..109803875,3	K562	blood:
9	chr6:109760182..109762059-chr6:109802883..109805670,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000135596	Chromatin interaction
ENSG00000155085	Chromatin interaction
ENSG00000185250	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000135587	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3377564	chr6:109803284-109806132	Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109797800-109803400	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr6:109798000-109803400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:109798000-109803400	Genic enhancers	Fetal Thymus	thymus
4	chr6:109798600-109803400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
5	chr6:109799200-109803400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:109799200-109803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:109799200-109803400	Weak transcription	Esophagus	oesophagus
8	chr6:109799600-109803800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:109799800-109803400	Enhancers	Ovary	ovary
10	chr6:109800000-109803400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:109800800-109803400	Enhancers	Thymus	Thymus
12	chr6:109801000-109803400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:109801200-109803400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr6:109801200-109803600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:109801200-109803600	Enhancers	Fetal Heart	heart
16	chr6:109801400-109803400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
17	chr6:109801400-109803400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:109801400-109803400	Genic enhancers	Fetal Muscle Leg	muscle
19	chr6:109801400-109803400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
20	chr6:109801400-109804400	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
21	chr6:109801600-109803400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:109801600-109803400	Enhancers	Right Ventricle	heart
23	chr6:109801600-109803400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
24	chr6:109801600-109804200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:109801800-109803400	Genic enhancers	Brain Cingulate Gyrus	brain
26	chr6:109801800-109803400	Transcr. at gene 5' and 3'	A549	lung
27	chr6:109801800-109803800	Enhancers	Stomach Mucosa	stomach
28	chr6:109802000-109803400	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:109802000-109803400	Enhancers	Psoas Muscle	Psoas
30	chr6:109802200-109803400	Genic enhancers	Fetal Stomach	stomach
31	chr6:109802200-109803400	Genic enhancers	Lung	lung
32	chr6:109802200-109803400	Enhancers	Right Atrium	heart
33	chr6:109802200-109803400	Enhancers	Small Intestine	intestine
34	chr6:109802200-109803600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr6:109802400-109803400	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr6:109802400-109803600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:109802400-109803600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr6:109802600-109803400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr6:109802600-109803400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:109802600-109803400	Enhancers	Brain Hippocampus Middle	brain
41	chr6:109802600-109803400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr6:109802600-109803400	Weak transcription	Fetal Brain Male	brain
43	chr6:109802600-109803800	Enhancers	Spleen	Spleen
44	chr6:109802800-109803400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr6:109802800-109803400	Enhancers	Brain Angular Gyrus	brain
46	chr6:109802800-109803400	Enhancers	HepG2	liver
47	chr6:109802800-109803400	Enhancers	HUVEC	blood vessel
48	chr6:109802800-109803600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:109802800-109804000	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr6:109803000-109803400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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