Variant report
| Variant | rs138332035 |
|---|---|
| Chromosome Location | chr6:117780657-117780658 |
| allele | -/GTATCA |
| Outlinks | Ensembl UCSC |
- TF binding region (count:10)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:10 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA3 | chr6:117780577-117781095 | MCF-7 | breast: | n/a | n/a |
| 2 | CEBPB | chr6:117780505-117781069 | A549 | lung: | n/a | chr6:117780793-117780804 |
| 3 | CEBPB | chr6:117780608-117780935 | K562 | blood: | n/a | chr6:117780793-117780804 |
| 4 | GATA3 | chr6:117780426-117781031 | MCF-7 | breast: | n/a | n/a |
| 5 | CEBPB | chr6:117780519-117781086 | MCF-7 | breast: | n/a | chr6:117780793-117780804 |
| 6 | CEBPB | chr6:117780631-117780981 | IMR90 | lung: | n/a | chr6:117780793-117780804 |
| 7 | CEBPB | chr6:117780645-117781150 | A549 | lung: | n/a | chr6:117780793-117780804 |
| 8 | CEBPB | chr6:117780648-117780954 | Hela-S3 | cervix: | n/a | chr6:117780793-117780804 |
| 9 | CEBPB | chr6:117780630-117780983 | HepG2 | liver: | n/a | chr6:117780793-117780804 |
| 10 | CEBPB | chr6:117780623-117780959 | K562 | blood: | n/a | chr6:117780793-117780804 |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU6-253P | TF binding region |
| ENSG00000047932 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532050 | chr6:117528154-118203005 | ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | esv3386499 | chr6:117779859-117781657 | Weak transcription Enhancers | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2367514 | chr6:117780372-117780840 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3522545 | chr6:117780448-117780763 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3522543 | chr6:117780453-117780769 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | esv3522544 | chr6:117780469-117780711 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv3522542 | chr6:117780551-117780718 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 8 | esv3522546 | chr6:117780556-117780658 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:117780400-117781000 | Enhancers | Foreskin Keratinocyte Primary Cells skin02 | Skin |
