Variant report

Variant	rs1383380
Chromosome Location	chr6:49496358-49496359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2396905	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4711927	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9395505	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024959	chr6:49290141-49652124	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021136	chr6:49295037-49631278	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885881	chr6:49439805-49575141	Weak transcription Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv933942	chr6:49480550-50004231	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49489400-49496400	Enhancers	Liver	Liver
2	chr6:49492400-49496400	Weak transcription	Stomach Mucosa	stomach
3	chr6:49494600-49496400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:49494600-49496600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:49494800-49496600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:49495400-49499600	Weak transcription	HepG2	liver
7	chr6:49495400-49500000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:49495800-49496600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:49495800-49497000	Enhancers	NHEK	skin
10	chr6:49496000-49496800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:49496200-49496600	Enhancers	HMEC	breast
12	chr6:49496200-49496800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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