Variant report

Variant	rs1383406
Chromosome Location	chr3:78899148-78899149
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs162423	0.85[CEU][hapmap];0.84[JPT][hapmap]
rs329813	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs331134	0.83[CEU][hapmap];0.89[JPT][hapmap]
rs331158	0.94[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78893600-78900000	Enhancers	HepG2	liver
2	chr3:78896000-78899200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:78896400-78899200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:78896600-78904200	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:78896600-78908400	Weak transcription	Osteobl	bone
6	chr3:78897200-78907200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:78897800-78900600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:78898000-78904400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:78898200-78900200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:78898200-78900400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:78898200-78904200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:78898200-78905000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:78898600-78904200	Weak transcription	Fetal Lung	lung
14	chr3:78898600-78906800	Weak transcription	A549	lung
15	chr3:78898800-78899400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:78898800-78899400	Enhancers	Brain Substantia Nigra	brain
17	chr3:78899000-78899200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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