Variant report

Variant	rs138353406
Chromosome Location	chr20:1702578-1702579
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv912596	chr20:1486637-1877150	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1057036	chr20:1493425-1869281	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv912597	chr20:1500506-1877150	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv833894	chr20:1519433-1753366	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv531473	chr20:1532476-1864506	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv1063429	chr20:1679052-1706969	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1793674	chr20:1685595-1704114	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv962538	chr20:1702183-1716952	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1698600-1703400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:1698600-1703400	Enhancers	NHEK	skin
3	chr20:1698600-1703600	Enhancers	HMEC	breast
4	chr20:1699800-1703200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr20:1700200-1702600	Weak transcription	Brain Anterior Caudate	brain
6	chr20:1700200-1703400	Enhancers	Primary B cells from peripheral blood	blood
7	chr20:1700600-1703000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr20:1701000-1702600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr20:1701400-1703600	Enhancers	Primary B cells from cord blood	blood
10	chr20:1701400-1714600	Weak transcription	Brain Hippocampus Middle	brain
11	chr20:1701800-1702600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
12	chr20:1701800-1702800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr20:1701800-1702800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr20:1701800-1703200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr20:1701800-1703800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr20:1701800-1703800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr20:1701800-1703800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr20:1701800-1704000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr20:1701800-1704000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr20:1702000-1702600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
21	chr20:1702000-1702800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr20:1702200-1702600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr20:1702200-1703200	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr20:1702400-1702600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr20:1702400-1703200	Enhancers	H9 Cell Line	embryonic stem cell
26	chr20:1702400-1703600	Flanking Active TSS	GM12878-XiMat	blood

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