Variant report

Variant	rs138393654
Chromosome Location	chr11:74858026-74858027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:74857899-74858098	HepG2	liver:	n/a	chr11:74858004-74858015
2	CEBPB	chr11:74857850-74858185	HepG2	liver:	n/a	chr11:74858004-74858015
3	CEBPB	chr11:74857822-74858095	HepG2	liver:	n/a	chr11:74858004-74858015
4	CEBPB	chr11:74857916-74858186	K562	blood:	n/a	chr11:74858004-74858015
5	JUND	chr11:74857920-74858122	HepG2	liver:	n/a	n/a
6	CEBPB	chr11:74857960-74858121	H1-hESC	embryonic stem cell:	n/a	chr11:74858004-74858015
7	CEBPB	chr11:74857925-74858160	Hela-S3	cervix:	n/a	chr11:74858004-74858015
8	CEBPB	chr11:74857855-74858155	IMR90	lung:	n/a	chr11:74858004-74858015

No.	Distal block	Cell Line	Cell type
1	chr11:74850392..74852587-chr11:74855694..74858278,2	MCF-7	breast:
2	chr11:74855408..74858303-chr11:74861375..74864283,3	K562	blood:
3	chr11:74856309..74859040-chr11:74914787..74916343,2	MCF-7	breast:
4	chr11:74851665..74854336-chr11:74855499..74858438,2	MCF-7	breast:
5	chr11:74856690..74858303-chr11:74861317..74863016,2	K562	blood:
6	chr11:74856790..74858510-chr11:74872953..74874736,2	K562	blood:

Variant related genes	Relation type
SLCO2B1	TF binding region
ENSG00000137491	Chromatin interaction
ENSG00000255395	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526053	chr11:74857436-74861545	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74852000-74861600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:74852400-74858200	Weak transcription	Esophagus	oesophagus
3	chr11:74852400-74861000	Weak transcription	Stomach Mucosa	stomach
4	chr11:74853800-74860200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:74853800-74862000	Enhancers	HepG2	liver
6	chr11:74853800-74862200	Enhancers	Placenta	Placenta
7	chr11:74854000-74862000	Enhancers	Fetal Intestine Large	intestine
8	chr11:74854400-74858400	Weak transcription	Left Ventricle	heart
9	chr11:74854400-74858400	Weak transcription	Right Atrium	heart
10	chr11:74854400-74858400	Weak transcription	Right Ventricle	heart
11	chr11:74855200-74862200	Enhancers	Fetal Intestine Small	intestine
12	chr11:74855600-74858200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:74855600-74858200	Weak transcription	Spleen	Spleen
14	chr11:74855600-74861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:74855600-74861600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:74855800-74858200	Weak transcription	Liver	Liver
17	chr11:74855800-74858200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:74855800-74858400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:74855800-74858800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:74855800-74858800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:74856000-74858400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:74856000-74858800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr11:74856200-74860200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr11:74856400-74859200	Enhancers	K562	blood
25	chr11:74856400-74859600	Enhancers	Colonic Mucosa	Colon
26	chr11:74856600-74858600	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:74857000-74859400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:74857000-74860000	Enhancers	Adipose Nuclei	Adipose
30	chr11:74857400-74858600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr11:74857400-74859000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
33	chr11:74857600-74859200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:74857800-74858200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:74857800-74859000	Enhancers	Brain Anterior Caudate	brain
36	chr11:74857800-74859000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:74857800-74859800	Enhancers	Lung	lung
38	chr11:74857800-74860000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr11:74857800-74860000	Enhancers	Fetal Muscle Leg	muscle
40	chr11:74858000-74860000	Enhancers	Fetal Thymus	thymus

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