Variant report

Variant	rs138420105
Chromosome Location	chr8:59664993-59664994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59660635..59662949-chr8:59662976..59665704,2	K562	blood:
2	chr8:59651354..59652911-chr8:59663564..59666386,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TOX-2	chr8:59664958-59665163	NONHSAT126796

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv4839	chr8:59664366-59665474	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59657600-59666400	Weak transcription	Fetal Stomach	stomach
2	chr8:59661200-59669200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:59661400-59665000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:59661400-59674600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:59661600-59666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:59661800-59665000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:59661800-59666000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:59662000-59666400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:59662600-59665000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:59663800-59665400	Enhancers	Thymus	Thymus
11	chr8:59664000-59665400	Enhancers	NHEK	skin
12	chr8:59664000-59666800	Enhancers	NHDF-Ad	bronchial
13	chr8:59664200-59666800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:59664200-59667600	Enhancers	Hela-S3	cervix
15	chr8:59664400-59665400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:59664400-59665400	Enhancers	NH-A	brain
17	chr8:59664600-59665800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:59664800-59665200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:59664800-59665400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:59664800-59665400	Enhancers	HMEC	breast
21	chr8:59664800-59665400	Enhancers	HUVEC	blood vessel
22	chr8:59664800-59665600	Flanking Active TSS	A549	lung
23	chr8:59664800-59665800	Enhancers	Colon Smooth Muscle	Colon
24	chr8:59664800-59667000	Enhancers	Osteobl	bone
25	chr8:59664800-59667200	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links