Variant report

Variant	rs138443175
Chromosome Location	chr4:120650889-120650890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1802546	chr4:120558608-120675026	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1010638	chr4:120586178-120671835	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1009771	chr4:120590902-120665812	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv1803992	chr4:120649398-120665812	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120646400-120651400	Weak transcription	Pancreas	Pancrea
2	chr4:120647600-120651000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:120647600-120651400	Weak transcription	Right Atrium	heart
4	chr4:120647600-120651600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:120647600-120651600	Weak transcription	Colonic Mucosa	Colon
6	chr4:120647600-120651800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:120647800-120651000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:120647800-120651400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:120647800-120652200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:120648000-120651000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:120648800-120651800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:120649400-120651000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:120649400-120653000	Enhancers	Hela-S3	cervix
14	chr4:120649600-120658200	Enhancers	NHLF	lung
15	chr4:120649800-120653200	Enhancers	Osteobl	bone
16	chr4:120650000-120651200	Enhancers	Sigmoid Colon	Sigmoid Colon
17	chr4:120650000-120651600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr4:120650000-120653000	Enhancers	NH-A	brain
19	chr4:120650000-120653400	Enhancers	HSMM	muscle
20	chr4:120650200-120651000	Weak transcription	Liver	Liver
21	chr4:120650200-120651400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:120650200-120651600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:120650200-120652400	Enhancers	HMEC	breast
24	chr4:120650200-120652400	Enhancers	HUVEC	blood vessel
25	chr4:120650200-120653000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:120650200-120653200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:120650200-120653400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr4:120650200-120653600	Enhancers	Fetal Lung	lung
29	chr4:120650200-120658000	Enhancers	HSMMtube	muscle
30	chr4:120650200-120658400	Enhancers	NHDF-Ad	bronchial
31	chr4:120650400-120651200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:120650400-120651200	Enhancers	Stomach Smooth Muscle	stomach
33	chr4:120650400-120651400	Enhancers	Fetal Heart	heart
34	chr4:120650400-120651400	Weak transcription	Placenta	Placenta
35	chr4:120650400-120651800	Weak transcription	Aorta	Aorta
36	chr4:120650400-120653600	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr4:120650400-120653600	Enhancers	Stomach Mucosa	stomach
38	chr4:120650400-120657200	Weak transcription	Psoas Muscle	Psoas
39	chr4:120650600-120651600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:120650800-120651400	Weak transcription	Left Ventricle	heart
41	chr4:120650800-120652400	Enhancers	Fetal Stomach	stomach
42	chr4:120650800-120652800	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links