Variant report

Variant	rs138448902
Chromosome Location	chr6:85824425-85824426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv520873	chr6:85824323-85834204	Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85822800-85825400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr6:85823400-85824600	Flanking Active TSS	Osteobl	bone
3	chr6:85823800-85824600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:85823800-85824600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:85823800-85824600	Flanking Active TSS	Fetal Brain Female	brain
6	chr6:85823800-85824600	Active TSS	Right Atrium	heart
7	chr6:85824000-85824600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:85824000-85824600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:85824000-85824600	Active TSS	Colon Smooth Muscle	Colon
10	chr6:85824200-85824600	Bivalent/Poised TSS	Fetal Brain Male	brain
11	chr6:85824400-85824600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:85824400-85824600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:85824400-85824600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:85824400-85824600	Active TSS	Fetal Lung	lung
15	chr6:85824400-85824600	Flanking Active TSS	Fetal Muscle Leg	muscle
16	chr6:85824400-85824600	Enhancers	Fetal Stomach	stomach
17	chr6:85824400-85824600	Active TSS	NHDF-Ad	bronchial
18	chr6:85824400-85825200	Weak transcription	Brain Germinal Matrix	brain
19	chr6:85824400-85826800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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