Variant report

Variant	rs138463895
Chromosome Location	chr4:120434106-120434107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC110373.1-8	chr4:120433968-120434125	NONHSAT098085
2	lnc-AC110373.1-8	chr4:120433968-120434125	NONHSAT098086
3	lnc-AC110373.1-8	chr4:120433968-120434125	NONHSAT098091
4	lnc-AC110373.1-8	chr4:120433968-120434125	NONHSAT147298
5	lnc-AC110373.1-8	chr4:120433968-120434125	NONHSAT098090
6	lnc-AC110373.1-8	chr4:120433927-120434125	NONHSAT098092

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv1012868	chr4:120014630-120464880	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv537232	chr4:120014630-120464880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv427694	chr4:120250511-120501728	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv879843	chr4:120326323-120502461	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv879844	chr4:120341296-120449810	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv879846	chr4:120341296-120491714	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv879845	chr4:120341296-120502461	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv879847	chr4:120371729-120450159	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
11	esv1802153	chr4:120397829-120457682	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120376400-120471600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:120377400-120439000	Weak transcription	Small Intestine	intestine
3	chr4:120377400-120439000	Weak transcription	Spleen	Spleen
4	chr4:120377600-120441000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:120377600-120501200	Weak transcription	Pancreas	Pancrea
6	chr4:120384400-120439200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:120397800-120442600	Weak transcription	Hela-S3	cervix
8	chr4:120403400-120445800	Weak transcription	A549	lung
9	chr4:120414000-120438200	Strong transcription	Osteobl	bone
10	chr4:120414400-120440400	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr4:120415200-120438800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr4:120416400-120434400	Weak transcription	Brain Substantia Nigra	brain
13	chr4:120416600-120434200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:120416800-120436000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr4:120417200-120434400	Weak transcription	K562	blood
16	chr4:120417200-120439400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:120417400-120434400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:120417600-120445800	Weak transcription	NHEK	skin
19	chr4:120419600-120439200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:120420200-120434200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:120420200-120434400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:120420200-120439000	Weak transcription	GM12878-XiMat	blood
23	chr4:120420200-120440200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:120420200-120440200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr4:120420200-120485400	Weak transcription	Fetal Brain Male	brain
26	chr4:120420400-120434200	Weak transcription	HMEC	breast
27	chr4:120420400-120449600	Weak transcription	Brain Angular Gyrus	brain
28	chr4:120420800-120434800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:120421000-120434200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:120421000-120443600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr4:120421000-120445600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr4:120421200-120455200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:120421400-120439000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:120421600-120434400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr4:120421600-120439000	Weak transcription	HUVEC	blood vessel
36	chr4:120422000-120446400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr4:120422200-120434200	Weak transcription	HSMMtube	muscle
38	chr4:120422200-120436400	Weak transcription	NHDF-Ad	bronchial
39	chr4:120422400-120434200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr4:120422800-120435600	Weak transcription	HSMM	muscle
41	chr4:120422800-120446600	Weak transcription	Fetal Stomach	stomach
42	chr4:120422800-120448400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:120423400-120450600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr4:120425400-120434200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr4:120427000-120437600	Weak transcription	Fetal Intestine Small	intestine
46	chr4:120427800-120437800	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr4:120428000-120444800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr4:120429800-120434200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:120430400-120439000	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr4:120430800-120439400	Strong transcription	HUES48 Cell Line	embryonic stem cell

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