Variant report

Variant	rs1384670
Chromosome Location	chr6:149200719-149200720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13217636	0.86[AFR][1000 genomes]
rs4897066	0.80[CHB][hapmap]
rs62426093	0.93[ASN][1000 genomes]
rs62426094	0.94[ASN][1000 genomes]
rs62426095	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62426096	0.96[ASN][1000 genomes]
rs62426100	0.89[AFR][1000 genomes]
rs72992387	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9386239	0.94[CEU][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1384670	EPM2A	cis	cerebellum	SCAN
rs1384670	UST	cis	cerebellum	SCAN
rs1384670	C6orf103	cis	parietal	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149191000-149203800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:149191200-149207600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:149191800-149205600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:149192600-149205600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:149193200-149218800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:149195200-149210200	Weak transcription	Right Ventricle	heart
7	chr6:149195800-149205600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:149196000-149203800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:149196200-149202400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:149196200-149202600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:149196200-149203200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:149196200-149204000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:149196200-149208600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:149196400-149200800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:149196400-149205800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:149196400-149206000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:149196400-149209800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:149197400-149205600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:149197600-149203800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr6:149197800-149204000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:149197800-149205800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:149198000-149203800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr6:149198000-149204000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:149198000-149205600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:149199400-149215600	Weak transcription	Spleen	Spleen
26	chr6:149199600-149200800	Enhancers	Ovary	ovary
27	chr6:149199600-149202400	Weak transcription	Lung	lung
28	chr6:149199600-149202600	Weak transcription	Thymus	Thymus
29	chr6:149199800-149202400	Weak transcription	Fetal Heart	heart
30	chr6:149200200-149200800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:149200200-149200800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:149200200-149201000	Enhancers	Aorta	Aorta
33	chr6:149200400-149204800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr6:149200600-149201400	Weak transcription	Fetal Thymus	thymus
35	chr6:149200600-149201600	Weak transcription	Dnd41	blood
36	chr6:149200600-149203800	Weak transcription	Primary B cells from peripheral blood	blood

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