Variant report

Variant	rs1385065
Chromosome Location	chr10:97033058-97033059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97030116..97038568-chr10:97046190..97052064,12	MCF-7	breast:
2	chr10:97031617..97033623-chr10:97049399..97051211,2	K562	blood:

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10786195	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11188250	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11188255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11593722	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11594748	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12775067	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17110556	0.80[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2296961	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35497513	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4917683	0.85[JPT][hapmap]
rs4918905	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4918908	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58140424	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97016800-97036000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr10:97021000-97034400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:97021400-97036400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:97024400-97035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:97024800-97049400	Weak transcription	Fetal Kidney	kidney
6	chr10:97026400-97033200	Weak transcription	Colon Smooth Muscle	Colon
7	chr10:97026800-97036000	Weak transcription	Fetal Lung	lung
8	chr10:97027200-97033200	Weak transcription	Hela-S3	cervix
9	chr10:97027400-97035800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:97028600-97033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:97028600-97033200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:97028600-97033400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:97028600-97036200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:97028600-97036200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:97028600-97038200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:97028800-97036000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:97029000-97036000	Weak transcription	Fetal Thymus	thymus
18	chr10:97029000-97039200	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:97029200-97033200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:97030600-97036200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:97030600-97037800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr10:97030800-97036200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr10:97031000-97034000	Weak transcription	Spleen	Spleen
24	chr10:97031000-97036000	Weak transcription	Gastric	stomach
25	chr10:97031000-97038200	Weak transcription	Fetal Stomach	stomach
26	chr10:97031400-97033200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:97031600-97033200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr10:97031600-97036200	Weak transcription	Primary B cells from cord blood	blood
29	chr10:97031600-97046600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr10:97031800-97033200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr10:97031800-97033200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr10:97032400-97040800	Enhancers	Stomach Mucosa	stomach
33	chr10:97032600-97034000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:97032600-97034400	Genic enhancers	GM12878-XiMat	blood
35	chr10:97032600-97036400	Enhancers	Liver	Liver
36	chr10:97032600-97041000	Enhancers	Fetal Intestine Large	intestine
37	chr10:97032600-97043600	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr10:97032800-97033200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:97032800-97033200	Enhancers	HSMMtube	muscle
40	chr10:97032800-97033200	Enhancers	NH-A	brain
41	chr10:97032800-97033400	Transcr. at gene 5' and 3'	NHEK	skin
42	chr10:97032800-97033600	Genic enhancers	Pancreas	Pancrea
43	chr10:97032800-97033800	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr10:97032800-97034000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr10:97032800-97034000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr10:97032800-97034000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:97032800-97034000	Enhancers	Fetal Heart	heart
48	chr10:97032800-97034000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr10:97032800-97034200	Flanking Active TSS	A549	lung
50	chr10:97032800-97034600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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