Variant report

Variant	rs138509642
Chromosome Location	chr10:6387864-6387865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6387353..6390083-chr10:6391651..6393610,2	K562	blood:
2	chr10:6335618..6337986-chr10:6387023..6389931,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226705	Chromatin interaction
ENSG00000212743	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
7	nsv5676	chr10:6381200-6428950	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv519424	chr10:6387220-6388928	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6356000-6388200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:6357200-6397400	Weak transcription	Pancreas	Pancrea
3	chr10:6371600-6389800	Weak transcription	Aorta	Aorta
4	chr10:6371800-6389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:6376800-6389400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:6377800-6389200	Weak transcription	Brain Substantia Nigra	brain
7	chr10:6379800-6388400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:6382800-6389600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:6384400-6389000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:6385400-6388200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr10:6385600-6389600	Weak transcription	Brain Germinal Matrix	brain
12	chr10:6385800-6389200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:6386000-6388200	Weak transcription	NHDF-Ad	bronchial
14	chr10:6386000-6388800	Weak transcription	Fetal Brain Male	brain
15	chr10:6386000-6389200	Weak transcription	Fetal Brain Female	brain
16	chr10:6386000-6389400	Weak transcription	Placenta	Placenta
17	chr10:6386000-6389400	Weak transcription	Spleen	Spleen
18	chr10:6386000-6390200	Weak transcription	Stomach Smooth Muscle	stomach
19	chr10:6387000-6389600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:6387200-6389200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr10:6387200-6389400	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr10:6387400-6388200	Enhancers	Dnd41	blood
23	chr10:6387400-6388600	Weak transcription	HSMMtube	muscle
24	chr10:6387600-6389000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:6387600-6389200	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:6387600-6389200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:6387800-6389200	Enhancers	Primary T cells from cord blood	blood

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