Variant report

Variant	rs138511168
Chromosome Location	chr4:45352282-45352283
allele	-/AATGCTATG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv594107	chr4:45338240-45436394	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv257098	chr4:45352282-45352290	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45349400-45352400	Weak transcription	Stomach Mucosa	stomach
2	chr4:45352000-45352800	Active TSS	Brain Substantia Nigra	brain
3	chr4:45352000-45353200	Enhancers	Fetal Heart	heart
4	chr4:45352200-45352400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:45352200-45352400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:45352200-45352400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr4:45352200-45352400	Enhancers	Dnd41	blood
8	chr4:45352200-45352800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:45352200-45352800	Active TSS	Brain Cingulate Gyrus	brain
10	chr4:45352200-45352800	Active TSS	Colon Smooth Muscle	Colon
11	chr4:45352200-45352800	Active TSS	GM12878-XiMat	blood
12	chr4:45352200-45352800	Active TSS	NHDF-Ad	bronchial
13	chr4:45352200-45353000	Active TSS	Muscle Satellite Cultured Cells	--
14	chr4:45352200-45353200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:45352200-45353200	Active TSS	Right Atrium	heart
16	chr4:45352200-45353200	Active TSS	Stomach Smooth Muscle	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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