The 2.0 version of rSNPBase

Variant report

Variant rs138521790
Chromosome Location chr1:228342800-228342801
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228332800-228349800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr1:228333200-228344600 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr1:228333800-228350400 Weak transcription Primary B cells from cord blood blood
4 chr1:228336800-228350200 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:228337000-228343000 Weak transcription Primary monocytes fromperipheralblood blood
6 chr1:228337200-228344400 Weak transcription Primary B cells from peripheral blood blood
7 chr1:228337400-228343000 Weak transcription Brain Germinal Matrix brain
8 chr1:228337600-228343600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr1:228337800-228343200 Weak transcription A549 lung
10 chr1:228337800-228349800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr1:228338000-228343600 Weak transcription Fetal Brain Female brain
12 chr1:228338000-228344000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
13 chr1:228338000-228349200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr1:228338000-228349600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr1:228338200-228342800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr1:228338200-228344800 Weak transcription Primary T regulatory cells fromperipheralblood blood
17 chr1:228338200-228344800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr1:228338200-228352400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr1:228338400-228349200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr1:228338600-228343000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr1:228339000-228344000 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr1:228339000-228346000 Weak transcription HMEC breast
23 chr1:228339200-228342800 Weak transcription HUES6 Cell Line embryonic stem cell
24 chr1:228339200-228342800 Weak transcription HSMM muscle
25 chr1:228339400-228342800 Weak transcription Osteobl bone
26 chr1:228339400-228343000 Weak transcription Stomach Mucosa stomach
27 chr1:228339400-228343400 Weak transcription Muscle Satellite Cultured Cells --
28 chr1:228339400-228344400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr1:228339400-228344400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr1:228339400-228345000 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr1:228339400-228352600 Weak transcription Brain Anterior Caudate brain
32 chr1:228339600-228342800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
33 chr1:228339600-228342800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr1:228339600-228342800 Weak transcription Lung lung
35 chr1:228339600-228343000 Weak transcription Duodenum Mucosa Duodenum
36 chr1:228339600-228344000 Weak transcription Adipose Nuclei Adipose
37 chr1:228339600-228345600 Weak transcription Right Atrium heart
38 chr1:228339600-228349000 Weak transcription NHLF lung
39 chr1:228339800-228343400 Weak transcription Brain Inferior Temporal Lobe brain
40 chr1:228339800-228343800 Weak transcription Gastric stomach
41 chr1:228339800-228343800 Weak transcription Skeletal Muscle Male skeletal muscle
42 chr1:228339800-228349400 Weak transcription Brain Angular Gyrus brain
43 chr1:228340000-228343600 Weak transcription Spleen Spleen
44 chr1:228340000-228344000 Weak transcription Liver Liver
45 chr1:228340000-228349200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:228340200-228345200 Weak transcription Right Ventricle heart
47 chr1:228340400-228343000 Weak transcription Fetal Heart heart
48 chr1:228340400-228343600 Strong transcription Fetal Stomach stomach
49 chr1:228340400-228343800 Weak transcription Pancreas Pancrea
50 chr1:228340600-228342800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015