Variant report

Variant	rs1385432
Chromosome Location	chr2:151898022-151898023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12233107	0.81[CEU][hapmap];0.84[MEX][hapmap]
rs13016235	0.82[EUR][1000 genomes]
rs13017640	0.82[EUR][1000 genomes]
rs13385131	0.84[MEX][hapmap]
rs13431234	0.84[ASN][1000 genomes]
rs1905751	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4664897	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56798657	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6433139	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs7565410	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7573397	0.85[EUR][1000 genomes]
rs7603913	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151890600-151899600	Weak transcription	Osteobl	bone
2	chr2:151891400-151906400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:151895400-151900000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:151896000-151898200	Enhancers	Fetal Lung	lung
5	chr2:151896000-151901000	Enhancers	HMEC	breast
6	chr2:151897000-151905800	Weak transcription	NHLF	lung
7	chr2:151897000-151906000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:151897000-151906000	Weak transcription	NHDF-Ad	bronchial
9	chr2:151897400-151899000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:151897600-151899000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:151897600-151899200	Weak transcription	NHEK	skin
12	chr2:151897800-151899000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr2:151898000-151906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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