Variant report

Variant	rs138551337
Chromosome Location	chr6:109626124-109626125
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:62)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:62 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr6:109625062-109626138	K562	blood:	n/a	n/a
2	MYC	chr6:109624828-109626301	K562	blood:	n/a	n/a
3	HMGN3	chr6:109625169-109626147	K562	blood:	n/a	n/a
4	SPI1	chr6:109625326-109626234	GM12878	blood:	n/a	n/a
5	EP300	chr6:109624869-109626613	K562	blood:	n/a	chr6:109624963-109624973
6	STAT5A	chr6:109625381-109626313	K562	blood:	n/a	n/a
7	CREB1	chr6:109625283-109626208	K562	blood:	n/a	n/a
8	CTCF	chr6:109625501-109626140	K562	blood:	n/a	n/a
9	ELF1	chr6:109625423-109626221	K562	blood:	n/a	n/a
10	MYC	chr6:109624868-109626229	K562	blood:	n/a	n/a
11	PML	chr6:109625114-109626211	K562	blood:	n/a	n/a
12	JUND	chr6:109624960-109626258	K562	blood:	n/a	n/a
13	GATA2	chr6:109625161-109626144	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
14	CEBPD	chr6:109625422-109626203	K562	blood:	n/a	n/a
15	MYC	chr6:109624986-109626259	K562	blood:	n/a	n/a
16	TRIM28	chr6:109624749-109626180	K562	blood:	n/a	n/a
17	RCOR1	chr6:109624924-109626269	K562	blood:	n/a	n/a
18	USF1	chr6:109625457-109626147	K562	blood:	n/a	n/a
19	JUN	chr6:109625148-109626221	K562	blood:	n/a	n/a
20	TAL1	chr6:109625149-109626289	K562	blood:	n/a	n/a
21	BHLHE40	chr6:109625057-109626198	K562	blood:	n/a	n/a
22	EP300	chr6:109625286-109626247	K562	blood:	n/a	n/a
23	GATA2	chr6:109625142-109626131	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
24	REST	chr6:109625439-109626160	K562	blood:	n/a	n/a
25	USF1	chr6:109625349-109626186	K562	blood:	n/a	n/a
26	CCNT2	chr6:109624959-109626164	K562	blood:	n/a	n/a
27	POLR2A	chr6:109625029-109626263	K562	blood:	n/a	n/a
28	HCFC1	chr6:109624970-109626203	K562	blood:	n/a	n/a
29	MAZ	chr6:109624869-109626317	K562	blood:	n/a	n/a
30	TEAD4	chr6:109624855-109626276	K562	blood:	n/a	n/a
31	TEAD4	chr6:109624744-109626315	K562	blood:	n/a	n/a
32	ZMIZ1	chr6:109624996-109626130	K562	blood:	n/a	n/a
33	GATA1	chr6:109625168-109626204	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
34	SPI1	chr6:109625378-109626204	K562	blood:	n/a	n/a
35	CBX3	chr6:109624641-109626455	K562	blood:	n/a	n/a
36	TBL1XR1	chr6:109624960-109626155	K562	blood:	n/a	n/a
37	NR2F2	chr6:109624855-109626397	K562	blood:	n/a	n/a
38	MYC	chr6:109624972-109626186	K562	blood:	n/a	n/a
39	ZBTB7A	chr6:109625684-109626219	K562	blood:	n/a	n/a
40	ATF1	chr6:109625016-109626254	K562	blood:	n/a	n/a
41	SPI1	chr6:109625814-109626268	HL-60	blood:	n/a	n/a
42	MAX	chr6:109625523-109626155	NB4	blood:	n/a	n/a
43	MAX	chr6:109624918-109626176	K562	blood:	n/a	n/a
44	GATA1	chr6:109624821-109626516	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
45	TBL1XR1	chr6:109624864-109626236	K562	blood:	n/a	n/a
46	BCLAF1	chr6:109625340-109626130	K562	blood:	n/a	n/a
47	GATA2	chr6:109625037-109626235	K562	blood:	n/a	chr6:109625249-109625265 chr6:109625251-109625258
48	JUN	chr6:109625326-109626400	K562	blood:	n/a	n/a
49	PML	chr6:109625279-109626150	K562	blood:	n/a	n/a
50	IRF1	chr6:109625111-109626126	K562	blood:	n/a	chr6:109625779-109625800

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109623091..109628183-chr6:109700606..109706462,9	K562	blood:
2	chr6:109625731..109626429-chr6:109704175..109704833,2	K562	blood:
3	chr6:109555640..109560553-chr6:109624000..109628580,4	K562	blood:
4	chr6:109625539..109627045-chr6:109630480..109632036,2	K562	blood:
5	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
6	chr6:109624351..109631970-chr6:109702157..109706422,11	K562	blood:

No data

Variant related genes	Relation type
ENSG00000201023	TF binding region
CCDC162P	TF binding region
ENSG00000243587	Chromatin interaction
ENSG00000203799	Chromatin interaction
ENSG00000260273	Chromatin interaction
ENSG00000135535	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527719	chr6:109624937-109631609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109619200-109626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:109619400-109629200	Weak transcription	Gastric	stomach
3	chr6:109619400-109638000	Weak transcription	HepG2	liver
4	chr6:109621400-109629600	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:109621600-109634000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:109622400-109626200	Enhancers	Placenta	Placenta
7	chr6:109623600-109629400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:109624000-109627000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:109624400-109626400	Flanking Active TSS	K562	blood
10	chr6:109624400-109626600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:109624600-109626200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr6:109624600-109626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:109624600-109626400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:109624600-109626400	Enhancers	Pancreas	Pancrea
15	chr6:109624600-109626600	Enhancers	Fetal Intestine Large	intestine
16	chr6:109624600-109631000	Enhancers	Fetal Intestine Small	intestine
17	chr6:109624800-109626200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:109624800-109626400	Enhancers	Stomach Mucosa	stomach
19	chr6:109624800-109627400	Enhancers	Primary B cells from peripheral blood	blood
20	chr6:109624800-109628200	Enhancers	Fetal Thymus	thymus
21	chr6:109624800-109629000	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:109625000-109626200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:109625000-109626200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:109625000-109626200	Enhancers	Left Ventricle	heart
25	chr6:109625000-109626200	Enhancers	Right Ventricle	heart
26	chr6:109625000-109626400	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:109625000-109627000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:109625000-109627000	Enhancers	Brain Substantia Nigra	brain
29	chr6:109625000-109627000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:109625000-109627400	Enhancers	Primary B cells from cord blood	blood
31	chr6:109625200-109626200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:109625200-109626200	Enhancers	Fetal Heart	heart
33	chr6:109625200-109626200	Enhancers	Thymus	Thymus
34	chr6:109625200-109626200	Enhancers	Spleen	Spleen
35	chr6:109625200-109626400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:109625200-109628200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr6:109625400-109626200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:109625400-109626200	Enhancers	Dnd41	blood
39	chr6:109625400-109627000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:109625600-109626200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:109625600-109626200	Enhancers	Lung	lung
42	chr6:109625600-109626200	Enhancers	Psoas Muscle	Psoas
43	chr6:109625600-109626200	Enhancers	Right Atrium	heart
44	chr6:109625600-109626400	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr6:109625600-109627200	Enhancers	Adipose Nuclei	Adipose
46	chr6:109625600-109628200	Weak transcription	Aorta	Aorta
47	chr6:109625800-109626200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr6:109625800-109626200	Enhancers	GM12878-XiMat	blood
49	chr6:109625800-109627200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr6:109625800-109627200	Enhancers	Brain Hippocampus Middle	brain

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