Variant report
| Variant | rs1385844 |
|---|---|
| Chromosome Location | chr4:175657308-175657309 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:175654877..175657458-chr4:175659006..175661544,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10010377 | 0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11935752 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12502189 | 0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12644776 | 0.94[YRI][hapmap] |
| rs1385834 | 0.84[YRI][hapmap] |
| rs1388338 | 1.00[YRI][hapmap] |
| rs1485932 | 0.84[YRI][hapmap] |
| rs1872550 | 1.00[YRI][hapmap] |
| rs2014095 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2029571 | 0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2062429 | 1.00[YRI][hapmap] |
| rs4695790 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4695960 | 0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6820505 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6828113 | 0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6846254 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6846840 | 0.83[AFR][1000 genomes] |
| rs6851846 | 0.83[AFR][1000 genomes] |
| rs7685430 | 0.81[YRI][hapmap] |
| rs959368 | 0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs979360 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869116 | chr4:175231090-175801761 | Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018390 | chr4:175475505-175969742 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034301 | chr4:175656538-176055348 | Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv537364 | chr4:175656538-176055348 | Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
