Variant report

Variant	rs138633359
Chromosome Location	chr15:34200840-34200841
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34199838..34201738-chr15:34201918..34204540,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv903984	chr15:34174066-34238804	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3311096	chr15:34198460-34202658	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv512390	chr15:34199814-34202735	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv6930	chr15:34200325-34200847	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv12433	chr15:34200448-34201748	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34191000-34202800	Weak transcription	NHLF	lung
2	chr15:34191400-34201000	Weak transcription	Pancreas	Pancrea
3	chr15:34195000-34203400	Weak transcription	Aorta	Aorta
4	chr15:34195800-34202800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:34199200-34201400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:34199200-34201800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:34199200-34202000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr15:34199400-34201200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:34199400-34201400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr15:34199400-34201600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr15:34199400-34201600	Enhancers	Osteobl	bone
12	chr15:34199600-34201200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:34199600-34201600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr15:34199600-34201600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr15:34199600-34220800	Weak transcription	Right Atrium	heart
16	chr15:34199800-34201000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:34199800-34202800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:34199800-34203200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:34199800-34203200	Weak transcription	Fetal Heart	heart
20	chr15:34200000-34201000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr15:34200000-34201000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:34200000-34202800	Weak transcription	HUVEC	blood vessel
23	chr15:34200200-34201400	Enhancers	HSMM	muscle
24	chr15:34200200-34201600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:34200600-34201200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:34200600-34201200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr15:34200600-34201200	Enhancers	NHDF-Ad	bronchial
28	chr15:34200600-34201400	Enhancers	NH-A	brain
29	chr15:34200600-34201600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:34200800-34201200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:34200800-34201200	Enhancers	Hela-S3	cervix
32	chr15:34200800-34201400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:34200800-34201400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:34200800-34201400	Enhancers	NHEK	skin
35	chr15:34200800-34201600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links