Variant report

Variant	rs138665963
Chromosome Location	chr13:39897588-39897589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3420061	chr13:39896952-39901350	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39891000-39899200	Weak transcription	Fetal Heart	heart
2	chr13:39892200-39901200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr13:39893000-39898400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:39893400-39897600	Enhancers	Adipose Nuclei	Adipose
5	chr13:39893600-39899000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:39893800-39899000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:39894200-39899000	Weak transcription	Right Ventricle	heart
8	chr13:39894200-39899000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr13:39894400-39899000	Weak transcription	Left Ventricle	heart
10	chr13:39894600-39898800	Weak transcription	Lung	lung
11	chr13:39894600-39899000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr13:39895400-39899000	Weak transcription	Right Atrium	heart
13	chr13:39895600-39898000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr13:39895800-39897600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:39895800-39897800	Enhancers	Brain Substantia Nigra	brain
16	chr13:39896000-39899200	Weak transcription	Fetal Muscle Leg	muscle
17	chr13:39896200-39897800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:39896200-39897800	Enhancers	Brain Anterior Caudate	brain
19	chr13:39896400-39897600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr13:39896400-39897600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:39896600-39897600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr13:39896600-39897600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr13:39897200-39897600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:39897200-39897600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr13:39897200-39897600	Flanking Active TSS	Brain Angular Gyrus	brain
26	chr13:39897200-39897800	Enhancers	Fetal Stomach	stomach
27	chr13:39897200-39899200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:39897400-39897600	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr13:39897400-39897600	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr13:39897400-39897600	Active TSS	Fetal Brain Male	brain
31	chr13:39897400-39898800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr13:39897400-39898800	Weak transcription	Fetal Lung	lung
33	chr13:39897400-39899000	Weak transcription	Aorta	Aorta
34	chr13:39897400-39899000	Weak transcription	Fetal Kidney	kidney
35	chr13:39897400-39899200	Weak transcription	Ovary	ovary

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