Variant report

Variant	rs138677784
Chromosome Location	chr22:31894150-31894151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:31892596..31895248-chr22:31897166..31900535,3	MCF-7	breast:
2	chr22:31892881..31894794-chr22:31897314..31900016,2	K562	blood:
3	chr22:31892695..31894776-chr22:32016253..32018919,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063634	chr22:31797004-31921254	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv459872	chr22:31833759-31977594	Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv588894	chr22:31833759-31977594	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv1060776	chr22:31869892-31900359	Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	esv3334530	chr22:31889221-31909085	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1059314	chr22:31893613-31936088	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31892800-31894200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr22:31893000-31905200	Weak transcription	Aorta	Aorta
3	chr22:31893200-31894200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:31893200-31903600	Weak transcription	Left Ventricle	heart
5	chr22:31893200-31912200	Weak transcription	Small Intestine	intestine
6	chr22:31893200-31934800	Weak transcription	Ovary	ovary
7	chr22:31893400-31894200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr22:31893400-31896600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr22:31893400-31897400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr22:31893400-31900000	Weak transcription	HSMM	muscle
11	chr22:31893400-31905200	Weak transcription	Fetal Intestine Large	intestine
12	chr22:31893400-31907200	Weak transcription	Fetal Intestine Small	intestine
13	chr22:31893400-31909000	Weak transcription	Liver	Liver
14	chr22:31893400-31920400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr22:31893400-31971200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr22:31893600-31894400	Enhancers	Primary B cells from cord blood	blood
17	chr22:31893600-31899800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr22:31893600-31900000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr22:31893600-31900000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr22:31893600-31900000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr22:31893600-31900000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr22:31893600-31900000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr22:31893600-31900000	Weak transcription	NHDF-Ad	bronchial
24	chr22:31893600-31904600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr22:31893600-31904600	Weak transcription	A549	lung
26	chr22:31893600-31904800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr22:31893600-31907000	Weak transcription	Lung	lung
28	chr22:31893600-31909000	Weak transcription	Fetal Brain Male	brain
29	chr22:31893600-31925600	Weak transcription	Gastric	stomach
30	chr22:31893600-31926200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr22:31893600-31928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr22:31893600-31934800	Weak transcription	Pancreas	Pancrea
33	chr22:31893600-31946600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr22:31893600-31970000	Weak transcription	Colonic Mucosa	Colon
35	chr22:31893800-31894200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
36	chr22:31893800-31894400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
37	chr22:31893800-31894800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr22:31893800-31894800	Weak transcription	Fetal Thymus	thymus
39	chr22:31893800-31895200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr22:31893800-31895200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr22:31893800-31895600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr22:31893800-31896000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr22:31893800-31897800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr22:31893800-31897800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr22:31893800-31897800	Weak transcription	Spleen	Spleen
46	chr22:31893800-31899000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr22:31893800-31900600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr22:31893800-31904800	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr22:31893800-31907000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr22:31893800-31907400	Weak transcription	Right Ventricle	heart

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