Variant report

Variant	rs138683790
Chromosome Location	chr2:55348505-55348506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:55347589..55350399-chr2:55353012..55356550,3	K562	blood:
2	chr2:55273963..55277742-chr2:55344682..55351127,9	K562	blood:
3	chr2:55348151..55351160-chr2:55366268..55368623,3	K562	blood:
4	chr2:55339781..55342552-chr2:55346442..55349594,4	K562	blood:
5	chr2:55347566..55351333-chr2:55355556..55357913,4	K562	blood:
6	chr2:55274620..55276240-chr2:55348004..55351084,3	K562	blood:
7	chr2:55319141..55322072-chr2:55348443..55351423,2	K562	blood:
8	chr2:55347650..55349740-chr2:55350733..55352941,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115310	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522772	chr2:55347472-55349726	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55337200-55351000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:55339400-55351000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:55342400-55350200	Enhancers	Fetal Heart	heart
4	chr2:55344400-55350200	Enhancers	Brain Cingulate Gyrus	brain
5	chr2:55344400-55350600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:55344600-55348600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:55344600-55350000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:55345200-55349000	Enhancers	Primary hematopoietic stem cells	blood
9	chr2:55345400-55350200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr2:55345400-55350200	Enhancers	Brain Angular Gyrus	brain
11	chr2:55345600-55350200	Enhancers	Brain Germinal Matrix	brain
12	chr2:55345600-55350200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr2:55345600-55350400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr2:55345800-55348600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:55345800-55348600	Enhancers	Adipose Nuclei	Adipose
16	chr2:55345800-55348800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:55345800-55348800	Enhancers	NHDF-Ad	bronchial
18	chr2:55345800-55349000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:55346000-55351600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr2:55346200-55350000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:55346400-55348600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:55346400-55349600	Weak transcription	HUVEC	blood vessel
23	chr2:55346600-55348600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr2:55346600-55350800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr2:55346800-55348600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:55346800-55348600	Enhancers	NHLF	lung
27	chr2:55346800-55349200	Enhancers	Fetal Stomach	stomach
28	chr2:55346800-55350200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:55347200-55348600	Enhancers	Fetal Brain Male	brain
30	chr2:55347400-55351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr2:55347400-55351000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr2:55347400-55351000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr2:55347600-55348600	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr2:55347600-55349400	Weak transcription	Lung	lung
35	chr2:55347600-55349400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr2:55347600-55349600	Weak transcription	Left Ventricle	heart
37	chr2:55347600-55349600	Weak transcription	Pancreas	Pancrea
38	chr2:55347600-55349600	Weak transcription	Right Ventricle	heart
39	chr2:55347600-55350000	Enhancers	Fetal Muscle Leg	muscle
40	chr2:55347600-55360600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr2:55347800-55348600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:55347800-55348800	Enhancers	HSMMtube	muscle
43	chr2:55347800-55350000	Enhancers	HSMM	muscle
44	chr2:55347800-55351000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr2:55348000-55348600	Enhancers	Fetal Kidney	kidney
46	chr2:55348000-55349600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr2:55348000-55350400	Enhancers	Brain Anterior Caudate	brain
48	chr2:55348000-55351000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr2:55348000-55351000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr2:55348200-55348600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links