Variant report

Variant	rs138688335
Chromosome Location	chr11:77441803-77441804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77435507..77439532-chr11:77440099..77442814,3	K562	blood:
2	chr11:77440760..77442573-chr11:77444032..77446751,2	K562	blood:

Variant related genes	Relation type
ENSG00000048649	Chromatin interaction
ENSG00000227376	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv975951	chr11:77440719-77446428	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77391600-77442000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:77394600-77445600	Weak transcription	Esophagus	oesophagus
3	chr11:77394600-77458800	Weak transcription	Small Intestine	intestine
4	chr11:77394800-77462600	Weak transcription	Fetal Heart	heart
5	chr11:77403200-77442200	Weak transcription	Brain Anterior Caudate	brain
6	chr11:77407200-77448000	Weak transcription	K562	blood
7	chr11:77409600-77453400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:77409600-77458800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:77409600-77478200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:77410400-77477600	Weak transcription	Brain Substantia Nigra	brain
11	chr11:77417200-77442000	Weak transcription	HUVEC	blood vessel
12	chr11:77424400-77442000	Weak transcription	Right Ventricle	heart
13	chr11:77428600-77442000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr11:77431600-77482400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr11:77434800-77442200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:77436000-77442200	Weak transcription	Fetal Stomach	stomach
17	chr11:77436000-77442600	Weak transcription	Pancreas	Pancrea
18	chr11:77436200-77442000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:77436200-77442000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:77436200-77442000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:77436200-77442000	Weak transcription	Liver	Liver
22	chr11:77436200-77442200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:77436200-77442200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr11:77436200-77442200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:77436200-77442600	Weak transcription	Ovary	ovary
26	chr11:77436200-77445400	Weak transcription	NHLF	lung
27	chr11:77436200-77445600	Weak transcription	Gastric	stomach
28	chr11:77436200-77451400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:77436200-77458600	Weak transcription	HSMMtube	muscle
30	chr11:77436200-77462600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:77436200-77463000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:77436200-77473400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:77436200-77477000	Weak transcription	Colonic Mucosa	Colon
34	chr11:77436400-77444400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr11:77436600-77444600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:77436600-77450200	Weak transcription	HSMM	muscle
37	chr11:77436600-77473200	Weak transcription	NHDF-Ad	bronchial
38	chr11:77436800-77442000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:77436800-77458600	Weak transcription	NH-A	brain
40	chr11:77441200-77442800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:77441400-77442400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:77441400-77442400	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr11:77441400-77442800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
44	chr11:77441400-77443200	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr11:77441400-77443400	ZNF genes & repeats	A549	lung
46	chr11:77441400-77443600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
47	chr11:77441400-77443800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
48	chr11:77441400-77443800	ZNF genes & repeats	GM12878-XiMat	blood
49	chr11:77441400-77444400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:77441400-77445000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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