Variant report

Variant	rs138699238
Chromosome Location	chr11:17620967-17620968
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17619891..17621109-chr11:17743288..17744431,5	MCF-7	breast:
2	chr11:17620244..17621142-chr11:17752157..17753016,5	MCF-7	breast:
3	chr11:17620421..17621053-chr11:17653404..17653971,2	MCF-7	breast:
4	chr11:17612630..17615852-chr11:17618211..17621966,5	K562	blood:
5	chr11:17620264..17621016-chr11:17999920..18001368,5	MCF-7	breast:
6	chr11:17620168..17621149-chr11:17752060..17752755,3	K562	blood:
7	chr11:17620453..17621194-chr11:17656903..17657523,2	K562	blood:
8	chr11:17620215..17621250-chr11:17751773..17752935,12	MCF-7	breast:
9	chr11:17620217..17621179-chr11:17742829..17744247,6	MCF-7	breast:
10	chr11:17620278..17621149-chr11:18000256..18000759,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv469938	chr11:17615203-17656148	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv467715	chr11:17615655-17656148	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv553587	chr11:17615655-17656148	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv897023	chr11:17617468-17667561	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv897024	chr11:17617468-17692011	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv897025	chr11:17619908-17640500	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17616400-17621000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:17620400-17621600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:17620400-17628800	Weak transcription	Right Atrium	heart
4	chr11:17620600-17621000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr11:17620600-17621000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr11:17620800-17621000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
7	chr11:17620800-17621000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:17620800-17621000	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:17620800-17622200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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