Variant report

Variant	rs138700746
Chromosome Location	chr9:95570266-95570267
allele	-/CGCCAGGGCGC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:95570260-95570410	SK-N-SH_RA	brain:	n/a	n/a
2	SRF	chr9:95570057-95570363	H1-hESC	embryonic stem cell:	n/a	n/a
3	SUZ12	chr9:95569398-95572352	NT2-D1	testis:	n/a	n/a
4	TCF3	chr9:95570103-95570431	GM12878	blood:	n/a	chr9:95570286-95570296
5	GABPA	chr9:95570060-95570382	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95431083..95433127-chr9:95569211..95571144,2	MCF-7	breast:
2	chr9:95431331..95434473-chr9:95569877..95572688,3	MCF-7	breast:

Variant related genes	Relation type
ANKRD19P	TF binding region
ENSG00000127080	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv972420	chr9:95566045-95588965	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3373736	chr9:95569656-95572504	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95569200-95571200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
2	chr9:95569400-95570600	Bivalent Enhancer	Primary B cells from cord blood	blood
3	chr9:95569400-95570600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
4	chr9:95569400-95571400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr9:95569400-95571600	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr9:95569400-95572400	Bivalent Enhancer	Fetal Brain Male	brain
7	chr9:95569400-95572400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr9:95569400-95572400	Bivalent Enhancer	Fetal Thymus	thymus
9	chr9:95569600-95570400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:95569600-95570400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:95569600-95570400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
12	chr9:95569600-95570600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
13	chr9:95569600-95570800	Bivalent Enhancer	Adipose Nuclei	Adipose
14	chr9:95569600-95570800	Enhancers	Right Atrium	heart
15	chr9:95569600-95571000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr9:95569600-95571200	Enhancers	Pancreas	Pancrea
17	chr9:95569600-95571400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
18	chr9:95569600-95572200	Bivalent Enhancer	Fetal Stomach	stomach
19	chr9:95569600-95572400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
21	chr9:95569600-95572400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:95569600-95572400	Flanking Active TSS	Right Ventricle	heart
23	chr9:95569600-95572600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr9:95569800-95570400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:95569800-95570400	Bivalent Enhancer	Fetal Brain Female	brain
26	chr9:95569800-95570400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
27	chr9:95569800-95570600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
28	chr9:95569800-95570600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:95569800-95570800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
30	chr9:95569800-95571000	Enhancers	Lung	lung
31	chr9:95569800-95571200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
32	chr9:95569800-95571200	Enhancers	Gastric	stomach
33	chr9:95569800-95571600	Bivalent Enhancer	Placenta	Placenta
34	chr9:95569800-95572200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:95569800-95572400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
37	chr9:95570000-95570400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr9:95570000-95570400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:95570000-95570400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:95570000-95570400	Flanking Bivalent TSS/Enh	Brain Angular Gyrus	brain
41	chr9:95570000-95570400	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
42	chr9:95570000-95570400	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
43	chr9:95570000-95570400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
44	chr9:95570000-95570600	Bivalent Enhancer	Brain Substantia Nigra	brain
45	chr9:95570000-95570600	Bivalent Enhancer	Thymus	Thymus
46	chr9:95570000-95570600	Bivalent Enhancer	NHEK	skin
47	chr9:95570000-95570800	Bivalent Enhancer	Aorta	Aorta
48	chr9:95570000-95570800	Active TSS	Brain Anterior Caudate	brain
49	chr9:95570000-95570800	Bivalent Enhancer	Esophagus	oesophagus
50	chr9:95570000-95570800	Bivalent Enhancer	Rectal Smooth Muscle	rectum

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