Variant report

Variant	rs138722293
Chromosome Location	chr5:115202963-115202964
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115191407..115193451-chr5:115202784..115204601,2	K562	blood:
2	chr5:115177412..115179376-chr5:115201368..115203253,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177879	Chromatin interaction
ENSG00000145782	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv3410990	chr5:115177597-115205832	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
4	esv3382194	chr5:115177673-115205801	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
5	esv3413410	chr5:115202400-115205763	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115179800-115205000	Weak transcription	HSMM	muscle
2	chr5:115185600-115218600	Weak transcription	Lung	lung
3	chr5:115187200-115206600	Weak transcription	Ovary	ovary
4	chr5:115187400-115206200	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:115189800-115218600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:115189800-115235800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:115190400-115206000	Weak transcription	Primary B cells from cord blood	blood
8	chr5:115191000-115223000	Weak transcription	Right Ventricle	heart
9	chr5:115192400-115207600	Weak transcription	Pancreas	Pancrea
10	chr5:115192800-115206000	Weak transcription	Left Ventricle	heart
11	chr5:115193200-115207400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:115193200-115239000	Weak transcription	Gastric	stomach
13	chr5:115193600-115234600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:115193800-115205200	Weak transcription	Primary T cells from cord blood	blood
15	chr5:115194000-115206000	Weak transcription	Fetal Lung	lung
16	chr5:115194000-115206000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr5:115194000-115206200	Weak transcription	Fetal Kidney	kidney
18	chr5:115194000-115211000	Weak transcription	HepG2	liver
19	chr5:115194200-115205200	Weak transcription	HUVEC	blood vessel
20	chr5:115194200-115206000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:115194200-115206200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:115194200-115209000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr5:115194400-115205000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr5:115194400-115205000	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr5:115194400-115206000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr5:115194400-115218000	Weak transcription	Fetal Intestine Small	intestine
27	chr5:115194400-115220800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:115195000-115206000	Weak transcription	Fetal Intestine Large	intestine
29	chr5:115195200-115206000	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:115195200-115206000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:115195200-115206200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:115195400-115205400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:115195400-115205600	Weak transcription	Adipose Nuclei	Adipose
34	chr5:115195400-115209000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:115195400-115263200	Weak transcription	Aorta	Aorta
36	chr5:115195600-115205800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr5:115195600-115206000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr5:115195600-115208600	Weak transcription	Osteobl	bone
39	chr5:115195600-115214600	Weak transcription	HSMMtube	muscle
40	chr5:115195800-115206000	Weak transcription	NHDF-Ad	bronchial
41	chr5:115196000-115206000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr5:115196000-115206000	Weak transcription	Placenta	Placenta
43	chr5:115196000-115211200	Weak transcription	Psoas Muscle	Psoas
44	chr5:115196000-115233600	Weak transcription	Esophagus	oesophagus
45	chr5:115196600-115205400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:115199600-115205400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr5:115200000-115205400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr5:115200000-115206000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr5:115200200-115206000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:115200200-115209000	Weak transcription	K562	blood

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