Variant report

Variant	rs1387474
Chromosome Location	chr10:16389315-16389316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11253911	0.81[EUR][1000 genomes]
rs11253912	0.83[EUR][1000 genomes]
rs11253924	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12247144	0.90[ASN][1000 genomes]
rs2130227	0.86[EUR][1000 genomes]
rs2210705	0.80[EUR][1000 genomes]
rs56906510	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7084487	0.85[EUR][1000 genomes]
rs7090427	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7090911	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7094394	0.84[EUR][1000 genomes]
rs73589749	0.82[EUR][1000 genomes]
rs7913700	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7920132	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530146	chr10:15722937-16522747	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv870420	chr10:16225427-16541252	Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894904	chr10:16233175-16477106	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv831796	chr10:16240111-16393044	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1051284	chr10:16321532-16392126	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	nsv521864	chr10:16386748-16389315	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1387474	DCLRE1C	cis	parietal	SCAN
rs1387474	MEIG1	cis	parietal	SCAN
rs1387474	RSU1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:16371800-16402200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:16388600-16390600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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