Variant report

Variant	rs138770033
Chromosome Location	chr4:144269340-144269341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144256119..144259388-chr4:144266158..144269819,4	MCF-7	breast:
2	chr4:144268435..144271097-chr4:144272609..144275318,3	K562	blood:

Variant related genes	Relation type
ENSG00000178972	Chromatin interaction
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033902	chr4:144114413-144285772	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv964100	chr4:144268743-144271466	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144259200-144272400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:144259400-144272000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:144259400-144272600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:144259600-144276200	Weak transcription	Fetal Kidney	kidney
5	chr4:144260000-144272800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:144261600-144272600	Weak transcription	Adipose Nuclei	Adipose
7	chr4:144263000-144276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:144263000-144277800	Weak transcription	Fetal Thymus	thymus
9	chr4:144264000-144270200	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:144264000-144276400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:144264200-144269600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:144264600-144269800	Enhancers	Fetal Intestine Small	intestine
13	chr4:144264600-144270000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:144264800-144269400	Weak transcription	Colonic Mucosa	Colon
15	chr4:144265000-144270000	Enhancers	Colon Smooth Muscle	Colon
16	chr4:144265600-144269600	Weak transcription	Lung	lung
17	chr4:144265600-144270000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr4:144265600-144270200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:144265600-144272000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr4:144265600-144276400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:144265800-144270000	Enhancers	Brain Angular Gyrus	brain
22	chr4:144265800-144272000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr4:144265800-144276400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:144266200-144272200	Weak transcription	Brain Germinal Matrix	brain
25	chr4:144266800-144269800	Enhancers	Stomach Smooth Muscle	stomach
26	chr4:144266800-144270400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr4:144266800-144272400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:144267200-144269400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:144267400-144269800	Flanking Active TSS	K562	blood
30	chr4:144267400-144270200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:144267400-144272800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr4:144267400-144272800	Weak transcription	Osteobl	bone
33	chr4:144267600-144270200	Enhancers	Brain Cingulate Gyrus	brain
34	chr4:144267800-144269400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:144267800-144269400	Weak transcription	Stomach Mucosa	stomach
36	chr4:144267800-144269600	Weak transcription	Left Ventricle	heart
37	chr4:144267800-144272200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr4:144267800-144272200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:144267800-144272200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr4:144267800-144272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr4:144267800-144272600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:144267800-144272800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:144268000-144270000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:144268000-144270000	Enhancers	Placenta Amnion	Placenta Amnion
45	chr4:144268000-144270200	Enhancers	HMEC	breast
46	chr4:144268000-144270200	Enhancers	NHEK	skin
47	chr4:144268000-144272000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:144268000-144272800	Weak transcription	HSMM	muscle
49	chr4:144268200-144269800	Enhancers	Duodenum Mucosa	Duodenum
50	chr4:144268400-144269800	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links