Variant report

Variant	rs138789839
Chromosome Location	chr18:28550406-28550407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833613	chr18:28446454-28623599	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv962953	chr18:28550392-28552581	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28549600-28550600	Enhancers	Fetal Brain Male	brain
2	chr18:28549800-28550600	Enhancers	Placenta	Placenta
3	chr18:28550000-28550600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:28550000-28550800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr18:28550400-28550600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr18:28550400-28550600	Flanking Active TSS	Brain Angular Gyrus	brain
7	chr18:28550400-28550600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr18:28550400-28550800	Enhancers	Liver	Liver
9	chr18:28550400-28550800	Flanking Active TSS	A549	lung
10	chr18:28550400-28550800	Flanking Active TSS	HMEC	breast
11	chr18:28550400-28550800	Flanking Active TSS	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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