Variant report

Variant	rs138820666
Chromosome Location	chr9:9796794-9796795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:9796725-9797083	HepG2	liver:	n/a	n/a
2	JUN	chr9:9796761-9797028	HepG2	liver:	n/a	chr9:9796897-9796910

Variant related genes	Relation type
ENSG00000230920	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526471	chr9:9718066-9832245	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2829906	chr9:9737201-9897866	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2753276	chr9:9762533-9799050	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1034731	chr9:9776126-10481262	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv892276	chr9:9778653-9851382	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2753179	chr9:9778653-9861006	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1019399	chr9:9780915-9942126	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv471276	chr9:9785685-9863227	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv892277	chr9:9785685-9882950	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv892278	chr9:9787587-9851382	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv892279	chr9:9789202-9798092	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv892280	chr9:9789202-9798666	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv613322	chr9:9790222-9805134	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv892281	chr9:9790222-9851382	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv892282	chr9:9790403-9798092	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv892283	chr9:9792811-9851382	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv613323	chr9:9793285-9802058	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv613324	chr9:9793285-9802404	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv466137	chr9:9793285-9831142	Active TSS Enhancers Weak transcription Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv613325	chr9:9793285-9831142	Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv1018814	chr9:9793285-9957301	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	nsv892284	chr9:9793342-9816063	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv466139	chr9:9793342-9858060	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv613326	chr9:9793342-9858060	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv892285	chr9:9794545-9809590	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv466140	chr9:9794545-9851382	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
29	nsv613327	chr9:9794545-9851382	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
30	nsv892286	chr9:9794545-9851382	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
31	nsv892287	chr9:9794545-9869714	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
32	nsv892288	chr9:9794545-9882950	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
33	nsv613328	chr9:9796116-9803954	Weak transcription Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
34	nsv613329	chr9:9796116-9805134	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
35	nsv613330	chr9:9796577-9819028	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
36	nsv1022667	chr9:9796577-9821895	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
37	esv2757311	chr9:9796608-9814116	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
38	esv2759664	chr9:9796608-9814116	Enhancers Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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