Variant report

Variant	rs138830523
Chromosome Location	chr2:101086803-101086804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:101086756-101086806	AG04449	skin:	fetal
2	chr2:101086756-101086806	U87	brain:	n/a
3	chr2:101086756-101086806	HL-60	blood:	n/a
4	chr2:101086756-101086806	MCF-7	breast:	n/a
5	chr2:101086756-101086806	H1-hESC	embryonic stem cell:	embryo
6	chr2:101086756-101086806	ovcar-3	ovarian:	n/a
7	chr2:101086756-101086806	AoSMC	blood vessel:	n/a
8	chr2:101086756-101086806	HRCEpiC	kidney:	n/a
9	chr2:101086756-101086806	HCM	heart:	n/a
10	chr2:101086756-101086806	HUVEC	blood vessel:	n/a
11	chr2:101086756-101086806	AG09309	skin:	n/a
12	chr2:101086756-101086806	PANC-1	pancreas:	n/a
13	chr2:101086756-101086806	SK-N-SH_RA	brain:	n/a
14	chr2:101086756-101086806	HCPEpiC	choroid plexus:	n/a
15	chr2:101086756-101086806	SK-N-MC	brain:	n/a
16	chr2:101086756-101086806	HIPEpiC	eye:	n/a
17	chr2:101086756-101086806	HCF	heart:	n/a
18	chr2:101086756-101086806	Jurkat	blood:	n/a
19	chr2:101086756-101086806	HAEpiC	amniotic membrane:	n/a
20	chr2:101086756-101086806	HNPCEpiC	eye:	n/a
21	chr2:101086756-101086806	A549	lung:	n/a
22	chr2:101086756-101086806	NHBE	bronchial:	n/a
23	chr2:101086756-101086806	HEK293	kidney:	embryo
24	chr2:101086756-101086806	PFSK-1	brain:	n/a
25	chr2:101086756-101086806	BE2_C	brain:	n/a
26	chr2:101086756-101086806	ProgFib	skin:	n/a
27	chr2:101086756-101086806	Hela-S3	cervix:	n/a
28	chr2:101086756-101086806	NHDF-neo	bronchial:	n/a
29	chr2:101086756-101086806	AG10803	skin:	n/a
30	chr2:101086756-101086806	HCT-116	colon:	n/a
31	chr2:101086756-101086806	SAEC	small airway:	n/a
32	chr2:101086756-101086806	BJ	skin:	n/a
33	chr2:101086756-101086806	K562	blood:	n/a
34	chr2:101086756-101086806	HRPEpiC	eye:	n/a
35	chr2:101086756-101086806	HPAEpiC	pulmonary alveolar:	n/a
36	chr2:101086756-101086806	GM12878	blood:	n/a
37	chr2:101086756-101086806	T-47D	breast:	n/a
38	chr2:101086756-101086806	MCF10A-Er-Src	breast:	n/a
39	chr2:101086756-101086806	LNCaP	prostate:	n/a
40	chr2:101086756-101086806	ECC-1	luminal epithelium:	n/a
41	chr2:101086756-101086806	GM06990	blood:	n/a
42	chr2:101086756-101086806	HMEC	breast:	n/a
43	chr2:101086756-101086806	HepG2	liver:	n/a
44	chr2:101086756-101086806	HEEpiC	esophagus:	n/a
45	chr2:101086756-101086806	CMK	blood:	n/a
46	chr2:101086756-101086806	IMR90	lung:	fetal
47	chr2:101086756-101086806	Caco-2	colon:	n/a
48	chr2:101086756-101086806	SK-N-SH	brain:	n/a
49	chr2:101086756-101086806	GM12892	blood:	n/a
50	chr2:101086756-101086806	AG09319	gingival:	n/a

No data

Variant related genes	Relation type
NMS	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007777	chr2:100816913-101308914	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv535844	chr2:100816913-101308914	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv582531	chr2:100908508-101207639	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv916792	chr2:101021066-101525200	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv582532	chr2:101029002-101531943	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv1011990	chr2:101039956-101105648	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv834312	chr2:101044438-101238166	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv582533	chr2:101086151-101103384	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:101086600-101087000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr2:101086800-101087000	Enhancers	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links