The 2.0 version of rSNPBase

Variant report

Variant rs138835674
Chromosome Location chr19:19754919-19754920
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19753200-19755000 Flanking Active TSS Primary T cells fromperipheralblood blood
2 chr19:19753400-19755000 Active TSS HUES6 Cell Line embryonic stem cell
3 chr19:19753400-19755000 Flanking Active TSS Stomach Smooth Muscle stomach
4 chr19:19753600-19755000 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
5 chr19:19753600-19755000 Active TSS Fetal Brain Female brain
6 chr19:19753800-19755000 Active TSS iPS-18 Cell Line embryonic stem cell
7 chr19:19753800-19755000 Active TSS Hela-S3 cervix
8 chr19:19753800-19755000 Active TSS HepG2 liver
9 chr19:19754400-19755000 Active TSS Brain Hippocampus Middle brain
10 chr19:19754400-19755000 Flanking Active TSS Fetal Thymus thymus
11 chr19:19754400-19755800 Weak transcription Small Intestine intestine
12 chr19:19754600-19755000 Flanking Active TSS Primary monocytes fromperipheralblood blood
13 chr19:19754600-19755000 Flanking Active TSS Primary neutrophils fromperipheralblood blood
14 chr19:19754600-19755000 Flanking Active TSS Primary B cells from cord blood blood
15 chr19:19754600-19755000 Flanking Active TSS Primary B cells from peripheral blood blood
16 chr19:19754600-19755000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
17 chr19:19754600-19755000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
18 chr19:19754600-19755000 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
19 chr19:19754600-19755000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr19:19754600-19755000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr19:19754600-19755000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
22 chr19:19754600-19755000 Flanking Active TSS Brain Germinal Matrix brain
23 chr19:19754600-19755000 Flanking Active TSS Colonic Mucosa Colon
24 chr19:19754600-19755000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
25 chr19:19754600-19755000 Flanking Active TSS Pancreas Pancrea
26 chr19:19754600-19755000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
27 chr19:19754600-19755000 Flanking Active TSS Thymus Thymus
28 chr19:19754600-19755000 Flanking Active TSS Dnd41 blood
29 chr19:19754600-19755200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
30 chr19:19754600-19755200 Flanking Active TSS GM12878-XiMat blood
31 chr19:19754600-19756000 Weak transcription Gastric stomach
32 chr19:19754800-19755000 Weak transcription H1 Cell Line embryonic stem cell
33 chr19:19754800-19755000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr19:19754800-19755000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
35 chr19:19754800-19755000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr19:19754800-19755000 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr19:19754800-19755000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
38 chr19:19754800-19755000 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr19:19754800-19755000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr19:19754800-19755000 Flanking Active TSS Primary T cells from cord blood blood
41 chr19:19754800-19755000 Enhancers Primary hematopoietic stem cells blood
42 chr19:19754800-19755000 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
43 chr19:19754800-19755000 Enhancers Muscle Satellite Cultured Cells --
44 chr19:19754800-19755000 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr19:19754800-19755000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr19:19754800-19755000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
47 chr19:19754800-19755000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr19:19754800-19755000 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr19:19754800-19755000 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
50 chr19:19754800-19755000 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015