Variant report

Variant	rs138889123
Chromosome Location	chr5:177120957-177120958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024444	chr5:176751921-177427715	Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	142 gene(s)	inside rSNPs	diseases
2	esv2752795	chr5:176898619-177488281	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv883182	chr5:176980995-177322056	Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	esv2762570	chr5:177101771-177138875	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1812144	chr5:177120697-177138298	Enhancers Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv519647	chr5:177120697-177260129	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177117600-177121000	Weak transcription	K562	blood
2	chr5:177119800-177121000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr5:177119800-177121200	Enhancers	Fetal Lung	lung
4	chr5:177120400-177121000	Enhancers	Left Ventricle	heart
5	chr5:177120400-177121000	Enhancers	Stomach Mucosa	stomach
6	chr5:177120600-177121000	Enhancers	Liver	Liver
7	chr5:177120600-177121000	Enhancers	Duodenum Mucosa	Duodenum
8	chr5:177120600-177121000	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr5:177120800-177121200	Enhancers	Ovary	ovary
10	chr5:177120800-177121200	Flanking Active TSS	HepG2	liver
11	chr5:177120800-177122000	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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