Variant report
| Variant | rs138895428 |
|---|---|
| Chromosome Location | chr10:38541791-38541792 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr10:38541562-38541801 | HepG2 | liver: | n/a | chr10:38541669-38541688 |
| 2 | CTCF | chr10:38541546-38541801 | HepG2 | liver: | n/a | chr10:38541668-38541686 chr10:38541670-38541691 chr10:38541671-38541684 chr10:38541669-38541685 |
| 3 | POLR2A | chr10:38541719-38541841 | MCF-7 | breast: | n/a | n/a |
| 4 | RAD21 | chr10:38541589-38541792 | HepG2 | liver: | n/a | chr10:38541669-38541688 |
| 5 | CTCF | chr10:38541596-38541793 | Gliobla | brain: | n/a | chr10:38541668-38541686 chr10:38541670-38541691 chr10:38541671-38541684 chr10:38541669-38541685 |
| 6 | RAD21 | chr10:38541520-38541851 | HepG2 | liver: | n/a | chr10:38541669-38541688 |
| 7 | CTCF | chr10:38541586-38541801 | T-47D | breast: | n/a | chr10:38541668-38541686 chr10:38541670-38541691 chr10:38541671-38541684 chr10:38541669-38541685 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234941 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv895030 | chr10:37715737-38674609 | Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 53 gene(s) | inside rSNPs | diseases |
| 2 | nsv540566 | chr10:38301001-38680127 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 3 | nsv947858 | chr10:38516576-38632253 | ZNF genes & repeats Active TSS Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
