Variant report

Variant	rs1389048
Chromosome Location	chr3:102961581-102961582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10737948	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1389050	1.00[CEU][hapmap]
rs1389051	1.00[CEU][hapmap]
rs2087831	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2087832	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6441703	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6441704	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6441705	0.91[EUR][1000 genomes]
rs6441706	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6802097	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7621913	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7652516	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460792	chr3:102467051-103087654	ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591191	chr3:102467051-103087654	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv877237	chr3:102924004-103035266	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1003336	chr3:102945342-102962981	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1014108	chr3:102945342-102988684	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102961200-102962200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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