Variant report

Variant	rs138911498
Chromosome Location	chr15:51792347-51792348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51693802..51694361-chr15:51791693..51792541,2	MCF-7	breast:
2	chr15:51790521..51793289-chr15:51842403..51845219,2	K562	blood:
3	chr15:51791214..51792773-chr15:51798432..51801383,2	K562	blood:
4	chr15:51693668..51696563-chr15:51791743..51794551,3	MCF-7	breast:
5	chr15:51787557..51789086-chr15:51791772..51793579,2	MCF-7	breast:
6	chr15:51755527..51758457-chr15:51791082..51792590,2	MCF-7	breast:
7	chr15:51703226..51705679-chr15:51790257..51792608,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv904217	chr15:51695653-51881980	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv904218	chr15:51743186-51873407	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv569405	chr15:51791559-51890282	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51763600-51826800	Weak transcription	Colonic Mucosa	Colon
2	chr15:51776600-51800000	Weak transcription	Esophagus	oesophagus
3	chr15:51776800-51793800	Weak transcription	Fetal Stomach	stomach
4	chr15:51776800-51797200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr15:51776800-51801600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:51776800-51815600	Weak transcription	Aorta	Aorta
7	chr15:51776800-51837600	Weak transcription	Fetal Thymus	thymus
8	chr15:51776800-51855200	Weak transcription	Thymus	Thymus
9	chr15:51777600-51819000	Weak transcription	Small Intestine	intestine
10	chr15:51777800-51795200	Weak transcription	Spleen	Spleen
11	chr15:51777800-51799600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:51778200-51811200	Weak transcription	NHDF-Ad	bronchial
13	chr15:51778400-51794400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:51778400-51825800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:51778600-51798200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:51778600-51801400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr15:51778800-51813400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:51779200-51799000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:51780000-51798200	Weak transcription	Fetal Intestine Small	intestine
20	chr15:51780400-51817600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:51780400-51855800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:51780800-51799600	Weak transcription	GM12878-XiMat	blood
23	chr15:51780800-51839000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:51781200-51794600	Weak transcription	Placenta	Placenta
25	chr15:51781200-51796800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:51781200-51797600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:51781200-51816600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr15:51781400-51863000	Weak transcription	HSMM	muscle
29	chr15:51781600-51795800	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:51781600-51817400	Weak transcription	Brain Angular Gyrus	brain
31	chr15:51781600-51837000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr15:51784600-51797400	Weak transcription	Hela-S3	cervix
33	chr15:51785000-51827400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr15:51786400-51799000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:51787200-51818400	Weak transcription	Primary T cells from cord blood	blood
36	chr15:51787400-51794200	Weak transcription	NHLF	lung
37	chr15:51787400-51806600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr15:51787400-51807600	Weak transcription	Liver	Liver
39	chr15:51787400-51855400	Weak transcription	Osteobl	bone
40	chr15:51789000-51794800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:51789600-51792400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr15:51790200-51792400	Strong transcription	Adipose Nuclei	Adipose
43	chr15:51790200-51792400	Strong transcription	HSMMtube	muscle
44	chr15:51790200-51801000	Strong transcription	Primary neutrophils fromperipheralblood	blood
45	chr15:51790800-51792400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:51790800-51792400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr15:51790800-51792400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:51790800-51792400	Strong transcription	K562	blood
49	chr15:51790800-51792600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:51791000-51792400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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