Variant report

Variant	rs138914097
Chromosome Location	chr2:11317402-11317403
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11315684..11318531-chr2:11354814..11356618,2	K562	blood:
2	chr2:11317175..11318147-chr2:11325991..11326847,2	K562	blood:
3	chr2:11294911..11296856-chr2:11315492..11318372,2	K562	blood:
4	chr2:11314637..11317626-chr2:11321207..11322858,2	K562	blood:

Variant related genes	Relation type
ENSG00000162976	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012083	chr2:11316299-11350604	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	esv3395022	chr2:11316915-11426380	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11296200-11329400	Weak transcription	Gastric	stomach
2	chr2:11296200-11412600	Weak transcription	Aorta	Aorta
3	chr2:11296400-11318800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:11296600-11319200	Weak transcription	Fetal Lung	lung
5	chr2:11296800-11318200	Weak transcription	A549	lung
6	chr2:11296800-11379800	Weak transcription	Small Intestine	intestine
7	chr2:11297600-11394400	Weak transcription	Right Ventricle	heart
8	chr2:11298200-11317600	Weak transcription	Fetal Brain Male	brain
9	chr2:11299200-11357000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:11301400-11330400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr2:11301800-11324600	Weak transcription	Primary B cells from cord blood	blood
12	chr2:11302400-11321400	Weak transcription	Fetal Intestine Small	intestine
13	chr2:11302400-11326200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr2:11302400-11335600	Weak transcription	Lung	lung
15	chr2:11304200-11317800	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:11304400-11317800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr2:11304400-11321400	Weak transcription	Esophagus	oesophagus
18	chr2:11304400-11321400	Weak transcription	Fetal Stomach	stomach
19	chr2:11304400-11325200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr2:11304400-11326400	Weak transcription	Colon Smooth Muscle	Colon
21	chr2:11304400-11329200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:11309800-11318200	Weak transcription	Placenta	Placenta
23	chr2:11309800-11327200	Weak transcription	K562	blood
24	chr2:11309800-11335600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:11310000-11319200	Weak transcription	Adipose Nuclei	Adipose
26	chr2:11310000-11337200	Weak transcription	Ovary	ovary
27	chr2:11310600-11317800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr2:11310600-11433000	Weak transcription	Pancreas	Pancrea
29	chr2:11312800-11319400	Weak transcription	Fetal Intestine Large	intestine
30	chr2:11313800-11319000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:11314000-11318000	Weak transcription	Fetal Kidney	kidney
32	chr2:11314000-11318400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr2:11314000-11318400	Weak transcription	HepG2	liver
34	chr2:11314600-11329600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr2:11314600-11332200	Weak transcription	Colonic Mucosa	Colon
36	chr2:11314600-11364200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr2:11314800-11321400	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr2:11315600-11317600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr2:11315600-11319200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr2:11315600-11319400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr2:11315600-11321600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr2:11315800-11317800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:11315800-11318200	Weak transcription	Brain Angular Gyrus	brain
44	chr2:11315800-11318200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr2:11315800-11320000	Weak transcription	Left Ventricle	heart
46	chr2:11315800-11321800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr2:11315800-11322000	Weak transcription	Brain Hippocampus Middle	brain
48	chr2:11315800-11322800	Weak transcription	Fetal Thymus	thymus
49	chr2:11315800-11326400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr2:11315800-11327400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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